Vascular bundle

[Katica Ilic]

Pankaj,

In the first publication (J Exp Bot, Tobin and Yamaya, 2001), they are
indeed reffering to vascular bundle, but once you see the micrographs,
(though it's not very clear), you can perhaps annotate it to a more
granular term (see fig 6 in the paper). If you can't use more granular term,
the appropriate PO term that can be used here is

PO:0020138 : leaf vein
Definition: A strand of vascular tissue in the leaf blade.

This definition nicely describes what they are showing it the manuscript.

As for the second link, I didn't understand why you need to use
'vascular bundle' specificaly. Can't you just use coresponding PO term
(leaf vein or similar)?

I thought we agreed to look into PO first and see what is already there,
before we started considering adding new terms. In this particular case,
it seems to me we are going in circles (since we already got rid of term
'vascular bundle').

Katica



On Thu, 26 Aug 2004,
Pankaj Jaiswal wrote:

> Hi,
>
> Now we need this term for the annotation of glutamate synthase from rice.
> reference:
> http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11373307
>
> as well as some of the phenotypes are there too
> http://www.gramene.org/db/qtl/qtl_display?query=*vascular+bundle*&search_field=trait_name&species=&submit=Submit
>
> -Pankaj
>
> Katica Ilic wrote:
>
> > Anu,
> >
> > We had this term in PO and obsoleted it back in May, but somehow, it
> > didn't make it to the obsolete node. The reason for obsoleting it was
> > that it was a vaguely defined term (if I remmber correctly).
> >
> > Katica
> >
> >
> > On Thu, 26 Aug 2004, Anuradha Pujar wrote:
> >
> >
> >>Hello
> >>
> >>
> >>I may be picking on an old debate, but i would like to know the response
> >>for the introduction of the term 'vascular bundle' into POC.
> >>
> >>anu
> >>
> >>
> >
> >
> > --------------------------------------------------------------------------
> > Katica Ilic             		katica at acoma.stanford.edu
> > The Arabidopsis Information Resource 	Tel: (650) 325-1521 ext. 253
> > Carnegie Institution of Washington 	FAX: (650) 325-6857
> > Department of Plant Biology 		URL: http://arabidopsis.org/
> > 260 Panama St.
> > Stanford, CA 94305
> > U.S.A.
> > --------------------------------------------------------------------------
> >
> >
> >
>
> --
> ************************
> Pankaj Jaiswal, PhD
> G15-Bradfield Hall
> Dept. of Plant Breeding
> Cornell University
> Ithaca, NY-14853, USA
>
> Tel: +1-607-255-3103
>       +1-607-255-4109
> Fax: +1-607-255-6683
> http://www.gramene.org
> ************************
>

--------------------------------------------------------------------------
Katica Ilic             		katica at acoma.stanford.edu
The Arabidopsis Information Resource 	Tel: (650) 325-1521 ext. 253
Carnegie Institution of Washington 	FAX: (650) 325-6857
Department of Plant Biology 		URL: http://arabidopsis.org/
260 Panama St.
Stanford, CA 94305
U.S.A.
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