Feedback Submission from Plant Ontology Live Site

[Polacco, Mary L.]

Pankaj,
No concerns other than my perennial difficulty with generic sensu ;)

On a related topic, I am working with MaizeGDB folks now on deliverying the associations files for Genes  and Stocks.
Are we doing any other categories?
Is the format basically the same as for GO?
  -mary
----Original Message-----
From: owner-po-dev at brie4.cshl.org on behalf of Pankaj Jaiswal
Sent: Wed 8/25/2004 12:25 PM
To: po-dev at plantontology.org
Subject: Re: Feedback Submission from Plant Ontology Live Site
 
Not yet. Gramene is expected to do a transition in the September for its 
db build. Hopefully by the end of October  we will be in a position to 
submit the associations for POC. Katica has similar plans for TAIR.

Sometime back we tried with a small set of associations from TAIR and 
Gramene to test the db and AmiGo. It worked, however, those were 
discarded at the time of public release.

I may be able to help you more if you can tell us more about your concerns.

Thanks
Pankaj


Polacco, Mary L. wrote:

> Thanks Pankaj. 
> Another question, are there any entries with associations from Gramene and TAIR - on public or dev sites?
> -mary
> 
> -----Original Message-----
> From: owner-po-dev at brie4.cshl.org on behalf of Pankaj Jaiswal
> Sent: Wed 8/25/2004 11:34 AM
> To: po-dev at plantontology.org
> Subject: Re: Feedback Submission from Plant Ontology Live Site
>  
> I guess the best would be the following. These are taking the user to a 
> query result page.
> 
> http://amigo.plantontology.org/go.cgi?action=query&view=query&search_constraint=terms&query=anther
> 
> http://amigo.plantontology.org/go.cgi?action=query&view=query&search_constraint=terms&query=anther 
> (sensu Zea)
> 
> http://amigo.plantontology.org/go.cgi?action=query&view=query&search_constraint=terms&query=PO:0005360
> 
> These would allow a generic search for "anther" or to a specific one 
> "anther (sensu Zea)" or by a term_accession (=term_id from flat files). 
> The link provided by you is going directly to the term detail page where 
> many of the options are not available.
> 
> -Pankaj
> 
> 
> 
> feedback_submission at brie4.plantontology.org wrote:
> 
> 
>>    *** Feedback from Plant Ontology Live Site ***
>>
>>refer_to_url: http://amigo.plantontology.org/go.cgi?view=details&search_constraint=terms&depth=0&query=PO:0005360&
>>
>>comments: Is this the best URL to use to lookup a term when linking from an external database such as MaizeGDB? 
>>
>>In particular when I wish to be able to access the PO associations for that term.
>>
>>What about 'sensu' generics, eg anther.
>>
>>name: Mary Polacco
>>
>>email: PolaccoM at missouri.edu
>>
>>organization: 
>>
>>send_feedback: Send your feedback
>>
>>
> 
> 

-- 
************************
Pankaj Jaiswal, PhD
G15-Bradfield Hall
Dept. of Plant Breeding
Cornell University
Ithaca, NY-14853, USA

Tel: +1-607-255-3103
      +1-607-255-4109
Fax: +1-607-255-6683
http://www.gramene.org
************************


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