<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><br><div><br><div>Begin forwarded message:</div><br class="Apple-interchange-newline"><div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="4" color="#000000" style="font: 14.0px Helvetica; color: #000000"><b>From: </b></font><font face="Helvetica" size="4" style="font: 14.0px Helvetica">"Mario Stanke" <<a href="mailto:mario.stanke@gmail.com">mario.stanke@gmail.com</a>></font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="4" color="#000000" style="font: 14.0px Helvetica; color: #000000"><b>Date: </b></font><font face="Helvetica" size="4" style="font: 14.0px Helvetica">July 16, 2008 3:16:08 PM EDT</font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="4" color="#000000" style="font: 14.0px Helvetica; color: #000000"><b>To: </b></font><font face="Helvetica" size="4" style="font: 14.0px Helvetica">"Dr. Tristan J. Fiedler" <<a href="mailto:fiedler@fit.edu">fiedler@fit.edu</a>></font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="4" color="#000000" style="font: 14.0px Helvetica; color: #000000"><b>Subject: </b></font><font face="Helvetica" size="4" style="font: 14.0px Helvetica"><b>Re: nGASP manuscript</b></font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; min-height: 14px; "><br></div> </div><div>Dear Tristan,<br><br>thanks gain for organizing this. This paper is of great value for the community.<br>I have just one suggestion:<br><br>Could you please replace citation 11 for AUGUSTUS with this one:<br><br><a href="http://bioinformatics.oxfordjournals.org/cgi/content/abstract/24/5/637?ijkey=AqOiFZBiTC5VhDS&keytype=ref">http://bioinformatics.oxfordjournals.org/cgi/content/abstract/24/5/637?ijkey=AqOiFZBiTC5VhDS&keytype=ref</a><br><br>Mario Stanke , Mark Diekhans , Robert Baertsch , and David Haussler<br>Using native and syntenically mapped cDNA alignments to improve de<br>novo gene finding<br>DOI 10.1093/bioinformatics/btn013.<br>Bioinformatics 24: 637-644.<br><br>This more recent paper reflects much better the methods I used for the<br>nGASP version of AUGUSTUS.<br><br>Thanks and best regards, Mario<br><br><br>2008/7/16 Dr. Tristan J. Fiedler <fiedler@fit.edu>:<br><blockquote type="cite">Dear nGASP Participants,<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">We thank you again for your participation in nGASP.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">The nGASP analysis team has now written up the results of nGASP<br></blockquote><blockquote type="cite">as a paper, which we plan to submit to BMC Bioinformatics.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">As agreed, we are sending you a copy of the draft manuscript<br></blockquote><blockquote type="cite">for your perusal before submission.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">We would be very grateful if you can let us know if you have any<br></blockquote><blockquote type="cite">major comments on the draft manuscript by Thursday 24th July.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Comments may be sent to ngasp-help@wormbase.org<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Yours sincerely,<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">The nGASP analysis team.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><br></blockquote><br></div></div><br></body></html>