From jspieth at watson.wustl.edu  Tue Apr  1 14:25:44 2008
From: jspieth at watson.wustl.edu (John Spieth)
Date: Tue, 01 Apr 2008 13:25:44 -0500
Subject: [Ngasp-help] japonica gene set
Message-ID: <47F27E28.2060803@watson.wustl.edu>

Hi Lincoln, Sheldon and the rest of the nGASPers,

Can an nGASP gene set be called on the preliminary japonica assembly?  I 
can be picked up at;

http://genome.wustl.edu/pub/organism/Invertebrates/Caenorhabditis_japonica/assembly/Caenorhabditis_japonica-3.0.2/

or

ftp://ftp.wormbase.org/pub/wormbase/genomes/japonica/draft_assembly_3.0.2

thanks,

John


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From jspieth at watson.wustl.edu  Thu Apr  3 11:25:59 2008
From: jspieth at watson.wustl.edu (John Spieth)
Date: Thu, 03 Apr 2008 10:25:59 -0500
Subject: [Ngasp-help] question
Message-ID: <47F4F707.3040909@watson.wustl.edu>

Dear nGASPers,

Would it be useful at add to the wormanalysis mail alias, the people who 
are generating gene sets for nGASP?  I might serve as an incentive.

cheers,

John


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From sheldon.mckay at gmail.com  Thu Apr  3 11:35:53 2008
From: sheldon.mckay at gmail.com (Sheldon McKay)
Date: Thu, 3 Apr 2008 11:35:53 -0400
Subject: [Ngasp-help] question
In-Reply-To: <47F4F707.3040909@watson.wustl.edu>
References: <47F4F707.3040909@watson.wustl.edu>
Message-ID: <bdd134570804030835vb26f3d7g59f510c8122c3fac@mail.gmail.com>

The only laggards at this point are the mGene folks but they have
given us 2 of 4 sets, as of this week.  Our own Darin Blasiar is
running JIGSAW on the complete sets now.  Do you still want to put the
mGene folks on?

Sheldon


On Thu, Apr 3, 2008 at 11:25 AM, John Spieth <jspieth at watson.wustl.edu> wrote:
>
>  Dear nGASPers,
>
>  Would it be useful at add to the wormanalysis mail alias, the people who
> are generating gene sets for nGASP?  I might serve as an incentive.
>
>  cheers,
>
>  John
>
>
>
> _______________________________________________
>  Ngasp-help mailing list
>  Ngasp-help at wormbase.org
>  http://mail.wormbase.org/mailman/listinfo/ngasp-help
>
>



-- 
Sheldon J. McKay, PhD
Cold Spring Harbor Laboratory
Office: 516-367-6998
Fax: 516 367-6851
Email: mckays at cshl.edu
Skype: mckays630


From jspieth at watson.wustl.edu  Thu Apr  3 11:47:13 2008
From: jspieth at watson.wustl.edu (John Spieth)
Date: Thu, 03 Apr 2008 10:47:13 -0500
Subject: [Ngasp-help] question
In-Reply-To: <bdd134570804030835vb26f3d7g59f510c8122c3fac@mail.gmail.com>
References: <47F4F707.3040909@watson.wustl.edu>
	<bdd134570804030835vb26f3d7g59f510c8122c3fac@mail.gmail.com>
Message-ID: <47F4FC01.8000401@watson.wustl.edu>



Sheldon McKay wrote:
> The only laggards at this point are the mGene folks but they have
> given us 2 of 4 sets, as of this week.  Our own Darin Blasiar is
> running JIGSAW on the complete sets now.  Do you still want to put the
> mGene folks on?
>   
It's your call Sheldon.  I was just wondering if might encourage them to 
move along quickly.

thanks,

John


> Sheldon
>
>
> On Thu, Apr 3, 2008 at 11:25 AM, John Spieth <jspieth at watson.wustl.edu> wrote:
>   
>>  Dear nGASPers,
>>
>>  Would it be useful at add to the wormanalysis mail alias, the people who
>> are generating gene sets for nGASP?  I might serve as an incentive.
>>
>>  cheers,
>>
>>  John
>>
>>
>>
>> _______________________________________________
>>  Ngasp-help mailing list
>>  Ngasp-help at wormbase.org
>>  http://mail.wormbase.org/mailman/listinfo/ngasp-help
>>
>>
>>     
>
>
>
>   
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