<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div>Thanks for clarifying this Anne</div><div><br></div>"_" between the authority and version number is a DAS coordinate convention, so for us that would stay the same.<div>This works ok for DAS as long as the clients people are using to access the Data allow people to attach DAS tracks to a different coodinate system.</div><div>It also relies on people knowing the difference between the two (or in this case lack of difference for the majority of mappings).</div><div><br></div><div>It maybe a good idea to have a mapping/pseudonym table and descriptions for coordinate systems in the DAS registry. This will still rely on people "in the know" putting data into these tables though. I've avoided pseudonyms as I think it makes things more complicated.</div><div><br></div><div>We are hoping to have the problem solved by the GCA accessions. <a href="http://www.ncbi.nlm.nih.gov/projects/genome/assembly/model.shtml">http://www.ncbi.nlm.nih.gov/projects/genome/assembly/model.shtml</a><br><div> <br><div><div>On 1 Jul 2011, at 12:59, Ann Loraine wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Hi,<br><br>I have an answer.<br><br>I corresponded with curators at TAIR.<br><br>They would like the name of the genome release to be:<br><br>TAIR10<br><br>Note the letters are all caps and there is no space or underscore separating<br>the number and the R.<br><br>Quoting Eva Huala, PI of TAIR:<br><br>"I prefer to keep using TAIR10 for both the assembly and annotation although<br>no changes were made to the assembly for this release."<br><br>Sincerely,<br><br>Ann Loraine<br><br><br>On 7/1/11 5:58 AM, "Dan Staines" <<a href="mailto:dstaines@ebi.ac.uk">dstaines@ebi.ac.uk</a>> wrote:<br><br><blockquote type="cite">Any news on this? As I've said, I'm happy to make a change, but the<br></blockquote><blockquote type="cite">window for doing so in the next release is closing rapidly!<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Many thanks,<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Dan.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">On 06/30/2011 02:48 PM, Ann Loraine wrote:<br></blockquote><blockquote type="cite"><blockquote type="cite">I contacted TAIR to get their input.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Probably I can give you a final answer as to what name to use later on<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">today.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Thanks for offering to make the change!<br></blockquote></blockquote><br>-- <br>Ann Loraine<br>Associate Professor<br>Dept. of Bioinformatics and Genomics, UNCC<br>North Carolina Research Campus<br>600 Laureate Way<br>Kannapolis, NC 28081<br>704-250-5750 (office)<br><a href="http://www.transvar.org">http://www.transvar.org</a><br><br><br></div></blockquote></div><br><div apple-content-edited="true"> <div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div>Jonathan Warren</div><div>Senior Developer and DAS coordinator</div><div>blog: <a href="http://biodasman.wordpress.com/">http://biodasman.wordpress.com/</a></div><div><a href="mailto:jw12@sanger.ac.uk">jw12@sanger.ac.uk</a></div><div>Ext: 2314</div><div>Telephone: 01223 492314</div></div><div><br></div></div></span><br class="Apple-interchange-newline"></div></span><br class="Apple-interchange-newline"></div></span><br class="Apple-interchange-newline"></div></span><br class="Apple-interchange-newline"></div><br class="Apple-interchange-newline"> </div><br></div></div>
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