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<div class=Section1>
<p class=MsoNormal><span style='font-size:11.0pt;color:navy'>Good Afternoon,<o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:11.0pt;color:navy'><o:p> </o:p></span></p>
<p class=MsoNormal><span style='font-size:11.0pt;color:navy'><o:p> </o:p></span></p>
<p class=MsoNormal><span style='font-size:11.0pt;color:navy'>Is it possible to
download a table delimited file with compound information from Ricecyc and SorghumCyc.
I noticed that TAIR supplies a file called aracyc_compounds.20080611 and
plantcyc_compounds.20080616, which is a tab delimited text file that contains
the following fields:<o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:11.0pt;color:navy'><o:p> </o:p></span></p>
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New";
color:windowtext'>aracyc_compounds contains all compounds found in AraCyc
pathways:<o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New";
color:windowtext'>1. compound common
name.
The common name of the compound.<o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New";
color:windowtext'>2. compound
synonyms. The synonyms of
the compound, joint by *.<o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New";
color:windowtext'>3. chemical
formula. The
chemical formula of the compound.<o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New";
color:windowtext'>4.
smiles.
The smiles string of the compound.<o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New";
color:windowtext'>5.
links.
Links to other databases for the compound, such as CAS. <o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New";
color:windowtext'>6.
EC.
EC number of the reaction which contains this compound either as a reactant or
a product. If no EC number, the AraCyc frame name for the reaction is given.<o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New";
color:windowtext'>7. reaction
equation. The equation of
the reaction.<o:p></o:p></span></p>
<p class=MsoNormal><span style='font-family:"Times New Roman","serif";
color:windowtext'>8. pathway.
The common name of the pathway which contains the reaction. One pathway per line.</span><span
style='font-family:"Times New Roman","serif";color:windowtext'><o:p></o:p></span></p>
<p class=MsoNormal><span style='font-family:"Times New Roman","serif";
color:windowtext'><o:p> </o:p></span></p>
<p class=MsoNormal><span style='font-family:"Times New Roman","serif";
color:windowtext'><o:p> </o:p></span></p>
<p class=MsoNormal><span style='font-size:11.0pt;color:navy'>I would like to
have similar information from Ricecyc and SorghumCyc.</span><span
style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:navy'><o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:11.0pt;color:navy'><o:p> </o:p></span></p>
<p class=MsoNormal><span style='font-size:11.0pt;color:navy'>Thanks,<o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:11.0pt;color:navy'><o:p> </o:p></span></p>
<p class=MsoNormal><span style='font-size:13.5pt;font-family:"Monotype Corsiva";
color:navy'>Michelle Lacy</span><span style='font-size:11.0pt;color:navy'><o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:13.5pt;font-family:"Monotype Corsiva";
color:navy'>Monsanto Company</span><span style='font-size:11.0pt;color:navy'><o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:navy'><o:p> </o:p></span></p>
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