<br><font size=2 face="sans-serif">Hi,</font>
<br>
<br><font size=2 face="sans-serif">I'm following instructions from the
file README.ensembl found in gramene-28.0.0.tar.gz</font>
<br>
<br><font size=2 face="sans-serif">It says:</font>
<br><font size=2 face="sans-serif">«</font>
<br><font size=2 face="sans-serif">3. Check out the gramene project from
CSHL's CVS repository. You may</font>
<br><font size=2 face="sans-serif"> need to use the cvs-tmp
dir, and then copy back into</font>
<br><font size=2 face="sans-serif"> /usr/local. The following
example checks-out the build28-branch;</font>
<br>
<br><font size=2 face="sans-serif"> $ cvs -d formaggio.cshl.org:/usr/local/cvs_repository
\</font>
<br><font size=2 face="sans-serif"> co -r build28-branch
gramene</font>
<br><font size=2 face="sans-serif">»</font>
<br>
<br><font size=2 face="sans-serif">But running this CVS command returns
this error:</font>
<br>
<br><font size=2 face="sans-serif">connect to address 143.48.31.42: Connection
timed out</font>
<br><font size=2 face="sans-serif">Trying krb4 rsh...</font>
<br><font size=2 face="sans-serif">connect to address 143.48.31.42: Connection
timed out</font>
<br><font size=2 face="sans-serif">trying normal rsh (/usr/bin/rsh)</font>
<br><font size=2 face="sans-serif">formaggio.cshl.edu: Connection timed
out</font>
<br><font size=2 face="sans-serif">cvs [checkout aborted]: end of file
from server (consult above messages if any)</font>
<br>
<br><font size=2 face="sans-serif">I got the same error when I tried to
install release 27. It's like there is no CVS server running on this machine.
My computer is connected directly to the internet and I can download files
from any other CVS repositories without any problem.</font>
<br>
<br><font size=2 face="sans-serif">I finished installing Gramene Core.
But when I open the 'Home' page (index.shtml) the Gramene navigation bar
is not displayed. But when I open any other page (ex.: protein/index.html),
it's displayed.</font>
<br><font size=2 face="sans-serif">Also, when I simply make a copy of index.shtml
called index2.html (not shtml), and open index2.html, the navigation bar
is displayed. There may be an issue with the server not adding the navigation
bar on SHTML pages.</font>
<br><font size=2 face="sans-serif">I renamed the file index.shtml to index.html
and restarted the Apache server, but it still looks for the file index.shtml
even when I enter index.html in the URL.</font>
<br><font size=2 face="sans-serif">The file cmap.conf/global.conf already
contains the line "page_object Gramene::Page".</font>
<br>
<br><font size=2 face="sans-serif">Thanks!<br>
</font><font size=2><b><br>
_______</b> <b><br>
Jonathan Arvisais</b> <br>
Programmeur Informatique</font>
<p><font size=2>T: (450) 358-2621 x224 <br>
DNA Landmarks Inc. <br>
84 Richelieu <br>
St.-Jean-sur-Richelieu, J3B 6X3<br>
Québec, Canada </font><font size=2 color=blue><u><br>
</u></font><a href=mailto:jonathan.arvisais@dnalandmarks.ca><font size=2 color=blue><u>jonathan.arvisais@dnalandmarks.ca</u></font></a><font size=2 color=blue><u><br>
</u></font><a href=http://www.dnalandmarks.ca/><font size=2 color=blue><u>www.dnalandmarks.ca</u></font></a><font size=2>
</font>
<p><font size=2 face="Helvetica"><b>DNA LandMarks</b></font><font size=2>
</font><font size=1 face="Helvetica"><i><br>
une compagnie de</i> </font><font size=1 face="Arial Black">BASF Plant
Science </font><font size=1 face="Helvetica"><i><br>
a</i> </font><font size=1 face="Arial Black">BASF Plant Science </font><font size=1 face="Helvetica"><i>company</i></font><font size=2>
</font>
<br>
<br>
<br>
<table width=100%>
<tr valign=top>
<td width=44%><font size=1 face="sans-serif"><b>Ken Youens-Clark <kclark@cshl.edu></b>
</font>
<p><font size=1 face="sans-serif">2008-09-16 18:10</font>
<td width=55%>
<table width=100%>
<tr valign=top>
<td>
<div align=right><font size=1 face="sans-serif">To</font></div>
<td><font size=1 face="sans-serif">Jonathan Arvisais <Jonathan.Arvisais@dnalandmarks.ca></font>
<tr valign=top>
<td>
<div align=right><font size=1 face="sans-serif">cc</font></div>
<td>
<tr valign=top>
<td>
<div align=right><font size=1 face="sans-serif">Subject</font></div>
<td><font size=1 face="sans-serif">Re: [Gramene] gramene CVS</font></table>
<br>
<table>
<tr valign=top>
<td>
<td></table>
<br></table>
<br>
<br>
<br><tt><font size=2>On Sep 11, 2008, at 10:00 AM, Jonathan Arvisais wrote:<br>
<br>
><br>
> Hi,<br>
><br>
> I'm installing gramene27 so I downloaded this file:<br>
> ftp://ftp.gramene.org/pub/gramene/CURRENT_RELEASE/software/gramene-27.0.0.tar.gz<br>
><br>
> Inside this archive, the file README.ensembl says I should download
<br>
> the gramene project from CSHL's CVS repository using this command:<br>
> $ cvs -d formaggio.cshl.org:/usr/local/cvs_repository \<br>
> co -r build26-branch gramene<br>
><br>
> I also tried:<br>
> $ cvs -d formaggio.cshl.org:/usr/local/cvs_repository \<br>
> co -r build27-branch gramene<br>
><br>
> But this CVS seems to be down, it returns this error message:<br>
> connect to address 143.48.31.42: Connection timed out<br>
> Trying krb4 rsh...<br>
> connect to address 143.48.31.42: Connection timed out<br>
> trying normal rsh (/usr/bin/rsh)<br>
> formaggio.cshl.edu: Connection timed out<br>
> cvs [checkout aborted]: end of file from server (consult above <br>
> messages if any)<br>
><br>
> I can download it from brebiou.cshl.edu:<br>
> $ cvs -d :pserver:anonymous@brebiou.cshl.edu:/usr/local/cvs co gramene<br>
> But it gives me release 21 of gramene.<br>
><br>
> Where can I find this build27-branch of gramene project?<br>
> Isn't it the same thing as what's found in gramene-27.0.0.tar.gz?<br>
> If so, why are the instructions to download it from the CVS are <br>
> found in gramene-27.0.0.tar.gz?<br>
><br>
> Thanks!<br>
<br>
Jonathan,<br>
<br>
We've just released version 28 today, so maybe you would have better <br>
luck just following those instructions? Please let me know if you
<br>
have any problems.<br>
<br>
ky<br>
</font></tt>
<br>