[Gramene] [Gramene-announce] Gramene database build 41 released

[Laurel Cooper]

Congratulations on your release!
Looks good,
Laurel

On 5/8/14 8:51 PM, Monaco, Marcela wrote:
> The Gramene Team is pleased to announce its release #41.  In collaboration with Ensembl Plants<http://http//plants.ensembl.org> we are providing in this release:
>
>    1.  New genomes for Amborella trichopoda, Prunus persica (peach), Oryza glumaepatula, O. meridionalis, and O. nivara.
>    2.  Updated gene models for bread wheat, O. barthii, and O. punctata. The Oryza gene models were updated using the OGE Maker pipeline.
>    3.  Updated split genes for 33 plant reference genomes based on the latest Ensembl Compara data.
>    4.  New sorghum variation data on the Sorghum Association Panel.
>    5.  Whole-genome alignments within bread wheat (i.e., between its component A, B, and D genomes).
>    6.  Calculation of homoeologous genes between bread wheat's component A, B and D genomes.
>    7.  Whole-genome alignments involving all new genomes.
>    8.  ESTs alignments against the peach and wheat genomes using STAR aligner.
>    9.  Updated biomart databases.
>    10. Updated genome browser, database schema and API to Ensembl version 75.
>    11. New orthology-based projections of rice pathways to Arabidopsis and maize.
>    12. Five newly curated rice pathways in Plant Reactome.
>
> A complete description of the contents of this new release is available in our release notes<http://gramene.org/release-notes-41>.
>
> Please let us know<http://tools.gramene.org/feedback> if you have questions or suggestions.
>
> The Gramene Team
>
> ==
> Marcela Karey Monaco, PhD
> Cold Spring Harbor Laboratory
>
> _______________________________________________
> Gramene-announce mailing list
> Gramene-announce at brie4.cshl.edu
> http://mail.gramene.org/mailman/listinfo/gramene-announce

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Laurel (Lol) Cooper, PhD
Coordinator, Plant Ontology Consortium
Dept. of Botany and Plant Pathology
Rm 3086, Cordley Hall
Oregon State University
Corvallis, OR 97331
Web: www.plantontology.org

Phone: 541-737-5272
Fax: 541-737-3573
Skype: cooperlol910
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