[Gramene] Re: [Gramene-announce] Gramene's 34th build

[cooperl at science.oregonstate.edu]

Congratulations on your release!
Laurel


Quoting "Youens-Clark, Ken" <kclark at cshl.edu>:

> The Gramene team is happy to announce the 34th major release of the  
> site. In our Ensembl genome browser, six genomes have been updated  
> and we have added Glycine max (soybean), Selaginella moellendorffii,  
> Chlamydomonas reinhardtii bringing us to 22 genomes.  We have also  
> updated the genome browser to Ensembl version 62, updated  
> blastz-chain-net whole genome alignments for new and updated  
> genomes, built new Compara gene trees, and updated protein domain  
> annotaions, cross-references and gene ontology (GO) projections.   
> The BioMart data mining tool has updated plant gene and variation  
> databases.  Our ontologies database has been updated to the latest  
> releases of GO, plant ontology (PO), and trait ontology (TO) and  
> includes many new associations to the genomes and genes of our new  
> species.  Our Pathways section now has official release versions of  
> MaizeCyc and BrachyCyc, and non-plant pathways were removed from  
> RiceCyc,SorghumCyc, and BrachyCyc.  The diversity section contains a !
>
>  new rice study of 14 agronomic traits from 226K SNPs across 374  
> lines from Huang X, et al, Nat Genet 2010, the 3.06 version of NSF  
> Arabidopsis 2010 Project 250K chip study, phenotype data from  
> single-gene studies, and a new association viewer for Arabidopsis  
> variation data which is also linked from our Arabidopsis Ensembl  
> genome browser.  Several Oryza germplasm have been added to our  
> germplasm database to bring the total to 13,265 records with links  
> to Gramene’s markers, map sets, genes and proteins, and our  
> distributed annotation server (DAS) has been updated with the latest  
> alignments for all our species.  Please let us know if you have and  
> problems or question with the new build.
>
> http://news.gramene.org/?p=760
>
> --
> Ken Youens-Clark
> kclark at cshl.edu
> Ware Lab/CSHL/USDA-ARS
>
>
>
>
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