[Gramene] PO association files

[keywan hassani-pak (RRes-Roth)]

Dear Gramene Support

I am using PO association files from your SVN: http://palea.cgrb.oregonstate.edu/viewsvn/Poc/trunk/associations/po_anatomy_gene_oryza_gramene.assoc?view=log

I would like to map the proteins in this file to UNIPROT proteins. Column 8 [With (or) From] contains sometimes a UNIPROT accession. Is this the accession of the actual protein or was this accession used to infer PO terms for the actual protein? In fact, I need to know which accession to use in order to retrieve the protein sequence for entries in your PO association files.  Any help or if you can introduce me to an appropriate person for that problem is much appreciated.


Best wishes
Keywan


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Keywan Hassani-Pak
Bioinformatics Scientist
Centre for Mathematical and Computational Biology
Rothamsted Research, Harpenden, AL5 2JQ, UK

Tel  : +44 (0)1582 763133 x2549
Mail : keywan.hassani-pak at bbsrc.ac.uk
Web  : http://www.rothamsted.ac.uk/staff.php?name=KeywanHassani-Pak