[Gramene] rice protein sequences

Peifen Zhang peifenz at acoma.stanford.edu
Wed Jun 17 13:14:49 EDT 2009


Hi,

I am trying to retrieve rice protein sequences at Gramene, i.e. 
LOC_Os01g01302. When I do a quick search for LOC_Os01g01302, it returned 
two proteins, Q0JRG4 and Q655K8, both referring to LOC_Os01g01302 
(http://www.gramene.org/db/searches/quick_search?category=&search_for=LOC_Os01g01302&x=0&y=0). 


My question is why there are two proteins and two sequences for 
LOC_Os01g01302? Is that because they are both best BLAST hits meeting a 
certain cut-off?

Finally, is rice-proteins.fa.zip in 
ftp://ftp.gramene.org/pub/gramene/fasta/ the correct file to retrieve 
rice protein sequences (for japonica group)?

Thanks and regards,
Peifen



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