[Gramene] rice protein sequences
Peifen Zhang
peifenz at acoma.stanford.edu
Wed Jun 17 13:14:49 EDT 2009
Hi,
I am trying to retrieve rice protein sequences at Gramene, i.e.
LOC_Os01g01302. When I do a quick search for LOC_Os01g01302, it returned
two proteins, Q0JRG4 and Q655K8, both referring to LOC_Os01g01302
(http://www.gramene.org/db/searches/quick_search?category=&search_for=LOC_Os01g01302&x=0&y=0).
My question is why there are two proteins and two sequences for
LOC_Os01g01302? Is that because they are both best BLAST hits meeting a
certain cut-off?
Finally, is rice-proteins.fa.zip in
ftp://ftp.gramene.org/pub/gramene/fasta/ the correct file to retrieve
rice protein sequences (for japonica group)?
Thanks and regards,
Peifen
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