[Gramene] Rice identifiers and orthologues

[narsar01 at student.uwa.edu.au]

Hi

I'm having problems finding the orthologues of my rice genes, I know I  
can find one at a time when I put in one identifier but I have 24,000  
TIGR LOC identifiers and I would like the Arabidopsis orthologues for  
these but I don't know how to extract that information. In order to  
deal with this, I looked up Arabidopsis vs. Rice in the inParanoid  
database (which gets it's source data from gramene) and the problem I  
now have is that the idenfiers are in another form for rice e.g.  
Q7F804 and I don't know how to get the conversion of the identifiers.

Also, it would be really useful to be able to extract the GO  
annotations for these rice genes too but I don't know where it is in  
the FTP database.

Thanks for your help.


Reena Narsai
PhD Candidate
Plant Energy Biology
ARC Centre of Excellence
The University of Western Australia
M316
Crawley WA 6009
Phone 61 8 6488 4434
Fax 61 8 6488 4401