[Gramene] Ryegrass sequences on your site

[Ken Youens-Clark]

On Oct 30, 2007, at 5:36 PM, Margaret Biswas wrote:
> When searching for our sequences using the Find Anything box at the  
> top right hand corner of you web page sequences that I find one day  
> are not found on others.
>
> For example, CLP0023043247-cF273_20040205 was visible one day and  
> not on the next. Other CLP0023 sequences I couldn’t find on one day  
> but found the next time I searched. I’m not able to find any of the  
> singleton sequences with names like fvlb002f192k11k0. In other  
> words, the search engine for the ryegrass sequences seems to be  
> behaving somewhat erratically. Maybe you can have a look at what  
> might be the problem.
>
> Thanks,
>
> Margaret
Margaret,

Yes, I can see the same behavior.  I've spent some time investigating  
this, and I'm not sure what the problem is.

Will,

When the search for "CLP0023043247-cF273_20040205" works, one hit is  
found in "Ensembl Indica" to this DNA align feature:

	http://www.gramene.org/Oryza_sativa_indica/featureview? 
type=DnaAlignFeature;id=CLP0023043247-cF273_20040205

The code that finds this match isn't using the quick search db but  
rather the Ensembl API directly.  Can you comment on why it's only  
found sporadically?

ky