genome annotation - combiner algorithms

Tristan Fiedler fiedler at cshl.edu
Wed Feb 14 16:18:57 EST 2007


Hello All,

nGASP (http://www.wormbase.org/wiki/index.php/NGASP) is currently in 
Phase II which is open to combiner algorithms or pipelines utilizing 
gene models from other annotation software as input data.  A list of 
candidate participants is below.  To maximize participation in Phase 
II, could you please let me know of any additional software packages 
which have been omitted.

     * Avril's combiner
     * DIGIT, T. Takagi
     * Ensembl Pipeline
     * GeneComber, Francis Ouellette
     * GLEAN, Aaron Mackey
     * Jigsaw, Jonathan Allen
     * Vladimir Pavlovic's pipeline, Vladimir Pavlovic

Thank you,

Tristan

---
Tristan J. Fiedler
Computational Postdoctoral Fellow
Mentor : Professor Lincoln Stein
Cold Spring Harbor Laboratory




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