Feedback Submission from the Gramene Live Site

[Pankaj Jaiswal]

You can get the same from 
ftp://ftp.gramene.org/pub/gramene/CURRENT_RELEASE/data/ontology/gramene_tigr_go_association.gz


-Pankaj
(gramene curator)

feedback_submission at www.gramene.org wrote:

>     *** Feedback from the Live Site ***
> 
> refer_to_url: http://www.gramene.org/Multi/martview
> 
> comments: I try to export some data, but it always shows the error "failed SQL....."
> 
> name: moriba
> 
> email: promoriba at yahoo.com.tw
> 
> organization: 
> 
> send_feedback: Send your feedback
> 
> 
Pankaj Jaiswal wrote:
 > feedback_submission at www.gramene.org wrote:
 >
 >>     *** Feedback from the Live Site ***
 >>
 >> refer_to_url: http://www.gramene.org/documentation/faq/onto_faq.html
 >>
 >> comments: Is there any data including locus name and GO allowed to
 >> download?
 >>
 >> name: moriba
 >>
 >> email: promoriba at yahoo.com.tw
 >>
 >> organization:
 >> send_feedback: Send your feedback
 >>
 >
 >
 > Dear Moriba,
 > You can get it by using the GrameneMart.
 >
 > For this please follow the following guide:
 >
 > #1 Go to 'Search" section of the navigation bar (next to the Gramene
 > icon) on top left of the Gramene page and from the drop down select
 > 'All-GrameneMart'
 >
 > #2 on the GrameneMart page that opens, select the data set 'Oryza sativa
 > genes (TIGR3)' and click the button 'next'. [if you want the data set
 > from a particular chromosome, select the chromosome before hitting the
 > 'next' button].
 >
 > # it will automatically select all the entries for loci/genes found in
 > the rice genome assembly. (e.g. 58752 total entries).
 >
 > # then click the button 'next', which will take you to a features page
 >
 > # On the features page from the gene/gene attributes section select the
 >  'TIGR Gene LOC ID" and make a second selection of the GO ID and
 > Description from 'Gene/External References section'.
 >
 > # after this go to the bottom of this page and select your 'output
 > format' and 'file compression' and click the button 'export'
 >
 > # e.g. if you have selected for output format 'text, tab separated' and
 > file compression 'gzip', by clicking the 'export' it will prompt you the
 > save or open as a normal function, where you would like to save your
 > file. Since it is a compressed file you will be required to unzip it.
 >
 > Please let us know if this does not work for you. In that case we will
 > provide the necessary file via our download features.
 >
 > Many thanks for using Gramene.
 >
 > Pankaj
 > Gramene curator
 > gramene at gramene.org
 >
 >