Feedback Submission from the Gramene Live Site

[Pankaj Jaiswal]

Dear Janet,

Gramene database is displaying the TIGR rice assembly version-2. This is 
  in the process of updating with TIGR assembly version-3 and should be 
available sometime in first fortnight of March.

On the TIGR's website you are looking at the latest version-3, where 
they have replaced the old locus ids with OsXXg##### numbers.  We will 
be carrying the same numbers when we display the version-3. However if 
you see the report for your gene Os01g08700 in TIGR, 
http://www.tigr.org/tigr-scripts/e2k1/euk_display.dbi?db=osa1&orf=Os01g08700 
you will see the same ids you are looking in Gramene
TIGR gene temp_id: 2758.t00018
TIGR model temp_id(s): 2758.m00135

I hope this will help.

Sincerely
Pankaj

gramene at gramene.org

feedback_submission at www.gramene.org wrote:

>     *** Feedback from the Live Site ***
> 
> refer_to_url: http://www.gramene.org/index.html
> 
> comments: 
> I am working on the flowering genes in rice and am finding it difficult to correlate the gene found on both the Gramene and TIGR rice genome browsers.
> 
> I have given the gigantea gene as an example.
> 
> In gramene the TIGR_TU ID is 2758.t00018 and GRPT00000160212 is shown as 2758.m00135
> 
> However in the TIGR Rice Genome Browser the TIGR loci is Os01g08700 and the protein accession is 11677.m00819
> 
> Please could you explain why the tigr IDs are different and whether in future versions of the gramene database the TIGR loci name will be used.
> 
> Thank you for your help
> 
> 
> name: Janet Higgins
> 
> email: janet.higgins at bbsrc.ac.uk
> 
> organization: John Innes Centre, Norwich, UK
> 
> send_feedback: Send your feedback
> 
> 

-- 
************************
Pankaj Jaiswal, PhD
G15-Bradfield Hall
Dept. of Plant Breeding
Cornell University
Ithaca, NY-14853, USA

Tel: +1-607-255-3103
      +1-607-255-4109
Fax: +1-607-255-6683
http://www.gramene.org
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