Problems about Gramene installation

[laurent.viau at bayercropscience.com]

Hello,

I have many questions about the Gramene installation. Indeed, We tried to
install Gramene since 3 weeks, but we didn't succeed it.
It exists many inconsistencies in your package.

- First, I would like to know why the release 13 is not available on your ftp
server (only the release 11 is available !) ?
So, maybe it explains the different problems we have :

Some majors problems are the wrong SQL requests in your Perl scripts :
For example, some requests are :
"SELECT feature.hid,contig.id,feature.seq_start,feature.seq_end,analysis.db
                                FROM feature,contig,analysis
                                WHERE hid $comparator '$keyword'
                                AND feature.contig=contig.internal_id
                                AND feature.analysis=analysis.id
                                ORDER BY analysis.db,feature.hid"

(in the script unisearch).

However, the table FEATURE doesn't exist in any ORACLE schema available on the
tfp site ?!
Therefore, the field "internal_id" int the table "CONTIG" doesn't exist ?!

Many requests such as the request above have been found in the main programs of
Gramene !!
Typically, it seems that it exists some inconsistencies between the ORACLE
schemas and the perl modules/perl scripts from Gramene ?!

- We obtained also a "classic" error when we try to access to the "Marker
search" or the "Rice Genome Browser".
"Can't locate object method "request" via package "Apache" at
/data/private/Gramene_files/cgi-bin/map/marker_view.cgi line 354."

However, our Apache package seems to be well installed (we make the verification
"print STDERR map { "$_ $INC{$_}\n" } sort keys %INC;" and @INC is well "fixed
up" in the <Perl> section of httpd.conf). Is there a specific perl module
"request.pm" to be install in the Apache package or another thing to do ??

Thanks a lot for your help !

Best regards,

Laurent

Laurent VIAU
Bayer CropScience
mail : laurent.viau at bayercropscience.com