Interest in Gramene
Steven Schmidt
schmidt at cshl.edu
Thu Apr 8 14:17:29 EDT 2004
Hello E. James,
If you send me the details of these problems, I will investigate them.
-Steve
On Monday 05 April 2004 07:38 am, evelyne.james at bayercropscience.com
wrote:
> Dear M. Stein,
>
> We are interested within Bayer CropScience by your Gramene Web site
> environment. As you offer the possibility to download your web
site, we
> have tried to do that in order to implement it internally.
>
> One of my collaborators, Laurent Viau, has downloaded and tried to
install
> the release 11 and more recently the release 13. He has encountered
a lot
> of difficulties to make running this environment. It seems like
there is
> inconsistencies between the Oracle schema and the Perl Scripts.
>
> For example :
> some DBI SQL requests don't work because the selected table
doesn't
> exist anymore.
> inconsistencies between the Oracle shema and the TSV files
(differences
> between the number of columns in the TSV files and the number of
fields
> in the Oracle tables).
> problems to execute some perl/bioperl scripts (compilation errors
due to
> some uninitialized values and some access to scripts that don't
exist...).
>
> Is there any possibilities for you to help us in this process of
> installation ? Maybe something is wrong in the release offered for
> downloading ... Could you be so kind to check if it is the case ?
>
> We would be ready if necessary to initiate a collaboration with you
in
> order to help us to implement efficiently within Bayer CropScience
your
> Gramene environment. Is this proposal conceivable for you ?
>
> Thank you in advance to tell us what would be the conditions of such
a
> collaboration.
>
> For information, we are located in France (in Evry near Paris) and
our
> informatics configuration is : Unix SUN servers with BioPerl, Perl,
PHP,
> Oracle 8.1.7, Apache server.
>
> Best regards,
>
> ___________________________________
> Dr. Evelyne James
> Bioinformation Manager
> Bayer CropScience SA / BioScience
> 4, rue Pierre Fontaine
> 91058 Evry Cedex, France
> Phone: 33 (0) 1 69 47 61 50
> Fax: 33 (0) 1 69 47 61 42
> GSM: 33 (0) 6 86 42 69 61
> e-mail: evelyne.james at bayercropscience.com
--
Steven Schmidt
www.gramene.org
Cold Spring Harbor Laboratory
516-367-6977
Maybe someday I'll start following my own advice.
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