FW: Help needed for SSRIT program!

[Lincoln Stein]

Hi Guys,

This is a symptom of mod_perl'ness.  There is apparently a variable that is 
not being reset between uses of the tool.  Try turning on -w and looking for 
"variable will not stay shared" warnings.

This will cause the tool to return incorrect results, so it should be a high 
priority to fix this problem.  The easiest solution is to move it to cgi-bin 
so it is out of control of mod_perl.

Lincoln

On Wednesday 18 June 2003 03:17 pm, Samuel W. Cartinhour wrote:
> Hi,
>
> I confirm that the web tool at
> http://www.gramene.org/gramene/searches/ssrtool sometimes produces an
> answer even when no sequence is typed into the text box. I just tried it a
> moment ago and produced a report concerning contig 10602-1.
>
> Sam
>
> -----Original Message-----
> From: owner-gramene at gramene.org [mailto:owner-gramene at gramene.org] On
> Behalf Of Vajrala, Neeraja
> Sent: Friday, June 13, 2003 11:30 AM
> To: gramene at gramene.org
> Subject: Help needed for SSRIT program!
>
> Hi,
>
> My name is Neeraja and I am trying to use your SSRIT program to find out
> SSR's in EST's of Meadowfoam crop. I am facing problems with the
> program. I am not getting consistent results for searches. Each time, I
> press Find SSR's button, I am getting different result. Sometimes, when
> I do not give any sequences and just press the button, then also I am
> getting results.
>
> Can you please tell me how to rectify this problem? Or tell me how to
> use the source code and run that program on my own machine?
>
> regards
> Neeraja

-- 
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Lincoln D. Stein                           Cold Spring Harbor Laboratory
lstein at cshl.org			                  Cold Spring Harbor, NY
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