SSRit working properly?

Steve Hamann shamann at grl1.grl.ars.usda.gov
Mon Jun 16 14:33:25 EDT 2003


  Genevieve DeClerck 

I have a question on the SSRit program.  This sequence below has a cgt (4) repeat.  However I cannot get the SSRit program to identify the sequence.  

I have the parameters set at (tetramer) and (5) for the number of repeats.  Shouldn't this identify this sequence?
> GCGCACTACCCGGCGCTCGCGCGGCTTTCTTTCCCAACTCCGACGAAGGCTAGCTACACC 
  ACCTGGTGCGGGCTCGTCTCCATCGCCCGCCACCCGCTCCGTCGTCGTCGTCCCCGCCGC
  GCCGATCCCGAATCGAATGGGGAGCCTGGCGTCCGAGAGGAAGGTGGTCGGGTGGGCCGC
  CAGGGACGCCACCGGACACCTCTCCCCCTACTCCTACACCCTCAGGAACACAGGCCCTGA
  AGATGTGGTGGTGAAGGTGCTCTACTGCGGGATCTGCCACACGGACATCCACCAGGCCAA
  GAACCACCTCGGGGCTTCAAAGTATCCTATGGTCCCTGGGCACGAGGTGGTCGGCGAGTG
  GTGGAGTCGGGCCCGAGTGGCCAAGTACGGCGTCGGCGACGTGGTAAGCGTCGGGGTGAT
  CGTTGGGTGCTGCCGCGAGTGThanks for any help you can provide on this.Bryan KindigerUSDA-ARSGrazinglands Research LaboratoryEl REno, OK  73036
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