SSRit working properly?
Steve Hamann
shamann at grl1.grl.ars.usda.gov
Mon Jun 16 14:33:25 EDT 2003
Genevieve DeClerck
I have a question on the SSRit program. This sequence below has a cgt (4) repeat. However I cannot get the SSRit program to identify the sequence.
I have the parameters set at (tetramer) and (5) for the number of repeats. Shouldn't this identify this sequence?
> GCGCACTACCCGGCGCTCGCGCGGCTTTCTTTCCCAACTCCGACGAAGGCTAGCTACACC
ACCTGGTGCGGGCTCGTCTCCATCGCCCGCCACCCGCTCCGTCGTCGTCGTCCCCGCCGC
GCCGATCCCGAATCGAATGGGGAGCCTGGCGTCCGAGAGGAAGGTGGTCGGGTGGGCCGC
CAGGGACGCCACCGGACACCTCTCCCCCTACTCCTACACCCTCAGGAACACAGGCCCTGA
AGATGTGGTGGTGAAGGTGCTCTACTGCGGGATCTGCCACACGGACATCCACCAGGCCAA
GAACCACCTCGGGGCTTCAAAGTATCCTATGGTCCCTGGGCACGAGGTGGTCGGCGAGTG
GTGGAGTCGGGCCCGAGTGGCCAAGTACGGCGTCGGCGACGTGGTAAGCGTCGGGGTGAT
CGTTGGGTGCTGCCGCGAGTGThanks for any help you can provide on this.Bryan KindigerUSDA-ARSGrazinglands Research LaboratoryEl REno, OK 73036
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