Genetic Map Download-feature_name<->Marker sequences

[Dave Matthews]

Greetings Foo,

Gramene obtained these three maps from GrainGenes so I can help you
with your request.

Not all of the markers on these maps have been sequenced, but the ones
that have been are available from GrainGenes.  A good way to get them
would be to use the canned query "Mapped sequences" at 
http://www.graingenes.org/cgi-bin/ace/custom/aqlInterface/graingenes.
Please try this and let me know if it does what you want.

Best regards,
- Dave

> From: "Cheung, Foo" <FCheung at tigr.org>
> To: "'gramene at gramene.org'" <gramene at gramene.org>
> Subject: Genetic Map Download-feature_name<->Marker sequences
> Date: Fri, 15 Aug 2003 15:52:53 -0400
> 
> Dear Sir/Madam
> 
> I downloaded the Genetic Maps 'gramane.maps.zip' on your website and was
> wondering where one can get the DNA sequences that has been mapped to the
> feature_name column?
> 
> Is there a way to download those sequences mapped to the feature_name/loci
> column? If they have been submitted to genbank then is the corresponding GB
> accession number available?
> 
> I am asking with specific reference to 
> Oat-Cornell_Diploid-1995.dat
> Wheat-Cornell_Synthetic-Opata_1995.dat
> Barley-NABGMP_SxM-1993.dat 
> 
> So for example, in Wheat-Cornell_Synthetic-Opata_1995.dat,
> at position 
> 26.4 on 1A, has the feature_name/loci ABC156, is the DNA sequence that maps
> to this loci available somewhere?
> 
> 
> Many Thanks
> Kind Regards
> 
> Foo


~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
David E. Matthews, Ph.D.            USDA-ARS Plant Genome Database Curator
Cornell University                  Email: matthews at greengenes.cit.cornell.edu
Department of Plant Breeding
409 Bradfield Hall                                 Phone: 607-255-9951 (Voice)
Ithaca, New York 14853, USA                               607-255-6683 (Fax)