finding search results in Genome View

Marco Filho pessoa at cenargen.embrapa.br
Sat Apr 12 21:18:58 EDT 2003


I´m not sure I really understood your problem, but you can view the 
whole clone by clicking on the bottom figure (the one which shows you a 
zoom of the leftmost area of the clone. By placing your mouse on the 
bottom figure you´ll have the "contig information" option...that will 
show you the whole clone with the submitted transcripts and other 
information such as markers.

Marco

> When you search for a feature (marker C585 for example), either with 
BLAST
> or by its name, the view of the BAC clone in Genome View always shows
> the leftmost 50 kb of the clone.  Which in this example doesn't even
> include the region where the feature is.  Besides which, 50 kb is a 
lot 
> of little rectangles to mouseover trying to find the feature you were
> looking for, if it isn't one that's labeled.
> 
> It would be much better if Genome View could zoom in on the item 
found, like
> GBrowse does, cf. http://wheat.pw.usda.gov/cgi-bin/gbrowse.
> 
> - Dave
> 
> 

----------------------------------------------------
Marco Aurélio Caldas de Pinho Pessoa Filho
Universidade de Brasília - UnB
Embrapa/Recursos Genéticos e Biotecnologia
Laboratório de Genética Vegetal
Brasília-DF
Brasil




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