finding search results in Genome View
Marco Filho
pessoa at cenargen.embrapa.br
Sat Apr 12 21:18:58 EDT 2003
I´m not sure I really understood your problem, but you can view the
whole clone by clicking on the bottom figure (the one which shows you a
zoom of the leftmost area of the clone. By placing your mouse on the
bottom figure you´ll have the "contig information" option...that will
show you the whole clone with the submitted transcripts and other
information such as markers.
Marco
> When you search for a feature (marker C585 for example), either with
BLAST
> or by its name, the view of the BAC clone in Genome View always shows
> the leftmost 50 kb of the clone. Which in this example doesn't even
> include the region where the feature is. Besides which, 50 kb is a
lot
> of little rectangles to mouseover trying to find the feature you were
> looking for, if it isn't one that's labeled.
>
> It would be much better if Genome View could zoom in on the item
found, like
> GBrowse does, cf. http://wheat.pw.usda.gov/cgi-bin/gbrowse.
>
> - Dave
>
>
----------------------------------------------------
Marco Aurélio Caldas de Pinho Pessoa Filho
Universidade de Brasília - UnB
Embrapa/Recursos Genéticos e Biotecnologia
Laboratório de Genética Vegetal
Brasília-DF
Brasil
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