rice protein coding genes

[Pankaj Jaiswal]

Dear Dr. Wang,

Gramene does not carry sequences in its database, however, we use the features
and the annotations available from the GenBank/EMBL to display the information
on Gramene. In addition we also carry out our own annotation using the same
sequence sets which we get it from GenBank/EMBL.

In this reference the sequence set we used for our current Rice Protein database
release is available at
ftp://www.gramene.org/pub/gramene/protein/sequence/rice_sptrembl.fa

If you are interested in finding out only the complete coding sequences for rice
then you may wish to use the following query at GenBank to retrieve the
sequences

(("Oryza"[Organism] OR oryza[All Fields]) AND (complete[All Fields] AND cds[All
Fields]))

For most recent updates on rice sequences please follow the links for 
Complete listing of Rice (Oryza sp.) sequences at
http://brie2.cshl.org:8082/resources/#sequence 


I wish this will help you in your work.

Best Regards
Pankaj

Huaichun Wang wrote:
> 
> Sir,
> I wonder whether Gramene has a file that contain sequences of rice
> protein coding genes. I checked "Sequence databases" but cannot find it.
> Can you advice me how to get it? Thanks.
> Huaichun

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