Help on curation of STAD_ORYSA

[Pankaj Jaiswal]

Hi Tanya,

I am confused on how to curate a rice entry which has a similarity to
Arabidopsis protein
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=search&db=nucleotide&doptcmdl=genbank&term=%22AF395441%22

Which biological process should I include for 
activator signal for Jasmonic acid dependent defence response

In Arabidopsis, the enzyme catalyzes a desaturation step that is required for
Jasmonic acid biosynthesis. Also acts as an activator signal for Jasmonic acid
dependent defence response at the time of pathogen interaction


Annotation for rice entry 
http://www.gramene.org/perl/protein_search?protein_id=78051

I have discarded the electronic annotation from Interpro matches.

Molecular Function|acyl-[acyl-carrier-protein]
desaturase|GO:0045300|GR_REF:62|ISS
Biological Process|fatty acid elongation, unsaturated fatty
acid|GO:0019368|GR_REF:62|ISS
Cellular Component|plastid stroma|GO:0009532|GR_REF:62|ISS
Cellular Component|chloroplast stroma|GO:0009570|GR_REF:62|ISS

Also we need to add GO terms 
Fatty acid desaurase 
and 
add "stearoyl ACP desaturase" as synonym for acyl-[acyl-carrier-protein]
desaturase; GO:0045300

Thanks
Pankaj

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Pankaj Jaiswal, Ph.D.                                   
Postdoctoral Associate
Dept. of Plant Breeding                             
Cornell University                                   
Ithaca, NY-14853, USA   

Tel:+1-607-255-3103 / Fax:+1-607-255-6683
E mail: pj37 at cornell.edu
http://www.gramene.org   
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