links from SWISS-PROT to Gramene

[Pankaj Jaiswal]

Dear Elisabeth,

Its great to know that SPTrEMBL will be providing links to Gramene for rice
proteins.

For details on the URL syntax please refer to 
http://brie2.cshl.org:8082/documentation/linkback.html

Or please follow: Linking back to Protein Database at Gramene

Use the Protein identifier file swissprot_linkback.txt at 
ftp://www.gramene.org/pub/gramene/protein/linkback/swissprot_linkback.txt

File format is as follows: 
Accession number|SWALL or SWISSPROT ID|Gramene Primary Identifier|Secondary
Identifier 
 for example: 
P19395|UGST_ORYSA|P19395|78073 

Using the SWISSPROT accession number (which is also our primary identifier): 
http://www.gramene.org/perl/protein_search?acc=accession number 
http://www.gramene.org/perl/protein_search?acc=P19395 

Using the SWISSPROT/SWALL ID: 
http://www.gramene.org/perl/protein_search?swall=SWISSPROT ID 
http://www.gramene.org/perl/protein_search?swall=UGST_ORYSA 

Using the Gramene internal IDs (Gramene's secondary ID): 
http://www.gramene.org/perl/protein_search?protein_id=Gramene ID 
http://www.gramene.org/perl/protein_search?protein_id=78073 

Sincerely

Pankaj
www.gramene.org


Elisabeth Gasteiger wrote:
> 
> Hello,
> 
> as you may know we will soon introduce links from SWISS-PROT/TrEMBL
> to Gramene.
> I am now trying to figure out the URL we should best be using
> to link out to you from ExPASy,
> e.g. http://us.expasy.org/cgi-bin/niceprot.pl?4CL2_ORYSA
> I have seen that I can search by SWISS-PROT accession number,
> e.g.
> http://www.gramene.org/perl/protein_search?word=P93436
> 
> However, the page we would really like to link to directly
> is the one you obtain once you click on the SWISS-PROT
> accession number, i.e.
> http://www.gramene.org/perl/protein_search?protein_id=77704
> 
> Unfortunately, this URL only contains the ID 77704, and not
> the SWISS-PROT accession number, which is the only information
> we have in our links. OUr links will be of the form
> 
> DR   Gramene; O04109; -.
> 
> Would it be possible for you to provide a way of getting to the "final"
> page, using the SWISS-PROT accession number in the link?
> We would really like to allow our users to reach the information
> in cross-referenced databases with as few clicks as possible.
> 
> Thanks in advance
> Elisabeth Gasteiger
> --
> -----------------------------------------------------------------
> Elisabeth Gasteiger
> Swiss Institute of Bioinformatics
> CMU - 1, rue Michel Servet                Tel. (+41 22) 702 58 75
> CH - 1211 Geneva 4 Switzerland            Fax  (+41 22) 702 58 58
> Elisabeth.Gasteiger at isb-sib.ch            http://www.expasy.org/
> -----------------------------------------------------------------