subspecies, cultivar, strain

[Pankaj Jaiswal]

Hi Steve,

The suggestions given by Dr. Ni were correct. However in these first 8 cases as
you have mentioned, Yes they should have a subspecies type, but we are yet to
figured out which sub species do they belong to. I will let you know about their
subspecies, but only after sometime as the IRIS database is not accessible (some
problem on their website). You can give a code /ID as default for IUC
(information under curation) and I will take a note of that and update, when i
will get through the IRIS. Please do not consider the GR:000078 and THIH_Orysa
entries. They are still in the process of curation.


Steven Schmidt wrote:
> 
> After some corrections given by Dr. Ni, we have the
> following list of combinations used by the proteins
> presently in the gramene database.
> Do the first 8 cultivars belong to a subspecies?
> Are there any more corrections?
> 
> -Steve
> 
> Species/Subspecies/Cultivar: #of proteins  example
>  /  / AICHIASAHI: 1, e.g. GR:000075
> Oryza sativa /  / : 16, e.g. THIH_ORYSA
> Oryza sativa /  / Hanfeng: 1, e.g. GR:000057
> Oryza sativa /  / Lomello: 1, e.g. GR:000038
> Oryza sativa /  / PIN GAEW 56: 1, e.g. GR:000008
> Oryza sativa /  / TALLAHAMSA: 1, e.g. GR:000070
> Oryza sativa /  / XBAI(19-93)517177: 1, e.g. GR:000042
> Oryza sativa /  / YUKIHIKARI: 3, e.g. GR:000046
> Oryza sativa /  / purple puttu: 1, e.g. GR:000049
> Oryza sativa /  / yamahoushi: 3, e.g. GR:000072
> Oryza sativa / indica  / IR36: 1, e.g. GR:000042
> Oryza sativa / indica / : 2, e.g. GR:000054
> Oryza sativa / indica / GUANG-LU-AI NO.4: 1, e.g. GR:000035
> Oryza sativa / indica / IR26: 5, e.g. GR:000027
> Oryza sativa / indica / IR36: 7, e.g. GR:000060
> Oryza sativa / japonica / : 6, e.g. GR:000058
> Oryza sativa / japonica / Fujihikari: 1, e.g. GR:000032
> Oryza sativa / japonica / LAMONT: 1, e.g. GR:000050
> Oryza sativa / japonica / M202: 7, e.g. GR:000031
> Oryza sativa / japonica / MILYANG: 1, e.g. GR:000076
> Oryza sativa / japonica / Nipponbare: 19, e.g. GR:000074
> Oryza sativa / japonica / SASANISHIKI: 1, e.g. GR:000053
> Oryza sativa / japonica / TAICHUNG NATIVE ONE: 1, e.g. GR:000064
> Oryza sativa / japonica / Taichung: 1, e.g. GR:000057
> 
> --
> Steven Schmidt
> snp.cshl.org     www.gramene.org
> Cold Spring Harbor Laboratory
> 516-367-6977

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Pankaj Jaiswal, Ph.D.                                   
Postdoctoral Associate
Dept. of plant Breeding                             
Cornell University                                   
Ithaca, NY-14853, USA   

Tel:+1-607-255-3103 / Fax:+1-607-255-6683
E mail: pj37 at cornell.edu
http://www.gramene.org   http://ars-genome.cornell.edu/rice
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