GO Vs Traits

[Pankaj Jaiswal]

Wait wait,

let me rephrase the things here. What actually Michael did here and I can do the
same too. (i apologise for not doing it earlier).....
 in trait ontologies, instead of framing the term as "deep water stress" , which
is rightly pointed out by Midori and Micheal as physiological stress type.
Michael reframed it as "response to deep water" which then becomes the
biological process. Now what?  if I reframe it as 

"deep water related trait" 

then will it fit the traits ontology. This is to curate a group of defined
classes of trait factors (on a  higher note) which the people will be looking in
for. They later become the parent for X-tolerance/X-resistance type of trait,
otherwise the higher nodes of biotic/abiotic stress related traits will have a
long list of children. 

> These, as Midori says, are environmental conditions:
>
>       %physicochemical stress ; GO:0301797
>       %chemical stress ; GO:0301774
>       %physiological stress ; GO:0301775
>       %deepwater stress ; GO:0302189 ; synonym:flooding
>       %drought stress ; GO:0302193
>       %light stress ; GO:0301777
>       %temperature stress ; GO:0302206

 I change them to :

   
>       %physicochemical stress related trait ; GO:0301797
>       %chemical stress related trait; GO:0301774
>       %physiological stress related trait; GO:0301775
>       %deepwater stress related trait; GO:0302189 ; synonym:flooding related trait
         %kneeling ability trait ; GO:0302185 ; ICIS:1212 ; synonym:KnA
         %submergence tolerance  trait; GO:0302187 ; ICIS:1215 ; synonym:Sub
         %elongation trait; GO:0302188 ; ICIS:1209 ; synonym:Elon
>       %drought stress related trait; GO:0302193
         %drought sensitivity ; GO:0302192 ; synonym:DRS
         %drought tolerance ; GO:0302191
         %drought recovery ; GO:0302190 ; synonym:DRR
>       %light stress related trait; GO:0301777
         %photoperiod sensitivity ; GO:0301776
>       %temperature stress related trait; GO:0302206
         %cold tolerance ; GO:0302204 ; synonym:CTol
         %heat tolerance ; GO:0302194 ; ICIS:1210 ; synonym:HTol

     
pankaj

Lincoln Stein wrote:
> 
>  >       %response to deepwater stress ; GO:0302189 ; synonym:flooding
> 
> "synonym: response to flooding" no?
> 
> Lincoln
> 
> --
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