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<p><span style="font-family:arial,helvetica,sans-serif">The Gramene
Knowledgebase Team is pleased to announce its <strong><a
data-cke-saved-href="http://www.gramene.org/release-notes-61"
href="http://www.gramene.org/release-notes-61"><span
style="color:#0000FF;">Release #61</span></a></strong> with
the <a
data-cke-saved-href="http://ensembl.gramene.org/genome_browser/index.html"
href="http://ensembl.gramene.org/genome_browser/index.html"><span
style="color:#0000FF;">Genome section</span></a> providing
access to information on 2,264,698 genes and 61 reference plant
genomes. It includes three new reference genomes: kiwifruit (<em><a
data-cke-saved-href="http://ensembl.gramene.org/Actinidia_chinensis"
href="http://ensembl.gramene.org/Actinidia_chinensis"
style="color: rgb(51, 71, 140);"><span style="color:#0000FF">Actinidia
chinensis</span>)</a></em>, and two ecotypes of Hall's
panicgrass (<a
data-cke-saved-href="http://ensembl.gramene.org/Panicum_hallii_fil2"
href="http://ensembl.gramene.org/Panicum_hallii_fil2"
style="color: rgb(51, 71, 140);"><span style="color:#0000FF"><em>Panicum
hallii</em> FIL2</span></a>) and (<a
data-cke-saved-href="http://ensembl.gramene.org/Panicum_hallii_hal2"
href="http://ensembl.gramene.org/Panicum_hallii_hal2"
style="color: rgb(51, 71, 140);"><span style="color:#0000FF"><em>Panicum
hallii</em> HAL2</span>)</a>, and updates to several
existing genomes. This release also includes <a
data-cke-saved-href="http://news.gramene.org/curated_maize_v4_gene_models"
href="http://news.gramene.org/curated_maize_v4_gene_models"><span
style="color:#0000FF">109 manually curated maize gene models</span></a>
as a <a
data-cke-saved-href="ftp://ftp.gramene.org/pub/gramene/CURRENT_RELEASE/gff3/zea_mays/curated_apollo_annotations_maize_v4.gff3"
href="ftp://ftp.gramene.org/pub/gramene/CURRENT_RELEASE/gff3/zea_mays/curated_apollo_annotations_maize_v4.gff3"><span
style="color:#0000FF">GFF file</span></a> to attach as a
custom track in Gramene's genome browser (and will soon be also
available as a permanent track). </span><span
style="font-family:arial,helvetica,sans-serif"><span
style="font-family:arial,helvetica,sans-serif">The <a
data-cke-saved-href="http://plantreactome.gramene.org"
href="http://plantreactome.gramene.org"><span
style="color:#0000FF;">Plant Reactome</span></a>, </span>Gramene's
pathway portal <span style="color:rgb(0, 0, 0)">hosts pathway
projections for 82 species including those in the Genome
section ranging from unicellular autotrophs to higher plants.
T</span>otal curated reference pathways are <span
style="color:rgb(0, 0, 0)">298</span>. See more details on the
<a data-cke-saved-href="http://Release #61"><span
style="color:#0000FF;">release #61 page</span></a>.</span><br>
</p>
<p><span style="font-family:arial,helvetica,sans-serif">Gramene
Knowledgebase is a curated, open-source, integrated data
resource for comparative functional genomics in crops and model
plant species. The genome databases were built in direct
collaboration with Ensembl Plants and the Plant Reactome
database was produced in collaboration with the Reactome
project. Core funding for the project is provided by the
National Science Foundation, USA.</span><br>
</p>
<hr>
<ul>
<li><strong>New Plant Genomes: </strong></li>
</ul>
<ol class="rteindent2">
<li><span style="font-family:arial,helvetica,sans-serif"><span
style="font-family:arial,helvetica,sans-serif">Kiwifruit (<a
data-cke-saved-href="http://ensembl.gramene.org/Actinidia_chinensis"
href="http://ensembl.gramene.org/Actinidia_chinensis"
style="color: rgb(51, 71, 140);"><span
style="color:#0000FF"><em>Actinidia chinensis</em></span></a>):
assembly and annotation <a
data-cke-saved-href="https://www.ebi.ac.uk/ena/data/view/GCA_003024255.1"
href="https://www.ebi.ac.uk/ena/data/view/GCA_003024255.1"
rel="external" style="color: rgb(51, 71, 140);
background-position: right center; background-repeat:
no-repeat; padding-right: 12px; background-image:
url("data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%0A%20%20%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%0A%20%20%20%20%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23ffffff%22%20stroke%3D%22%23697ec9%22%2F%3E%0A%20%20%20%20%3Cg%3E%0A%20%20%20%20%20%20%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%23697ec9%22%2F%3E%0A%20%20%20%20%20%20%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23ffffff%22%2F%3E%0A%20%20%20%20%3C%2Fg%3E%0A%20%20%3C%2Fg%3E%0A%3C%2Fsvg%3E%0A");">GCA_003024255.1</a></span></span></li>
<li><span style="font-family:arial,helvetica,sans-serif"><a
data-cke-saved-href="http://ensembl.gramene.org/Panicum_hallii_fil2"
href="http://ensembl.gramene.org/Panicum_hallii_fil2"
style="color: rgb(51, 71, 140);"><span style="color:#0000FF"><em>Panicum
hallii</em> FIL2</span></a>: PHallii_v3.1 assembly and
annotation <a
data-cke-saved-href="https://www.ebi.ac.uk/ena/data/view/GCA_002211085.2"
href="https://www.ebi.ac.uk/ena/data/view/GCA_002211085.2"
rel="external" style="color: rgb(51, 71, 140);
background-position: right center; background-repeat:
no-repeat; padding-right: 12px; background-image:
url("data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%0A%20%20%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%0A%20%20%20%20%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23ffffff%22%20stroke%3D%22%23697ec9%22%2F%3E%0A%20%20%20%20%3Cg%3E%0A%20%20%20%20%20%20%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%23697ec9%22%2F%3E%0A%20%20%20%20%20%20%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23ffffff%22%2F%3E%0A%20%20%20%20%3C%2Fg%3E%0A%20%20%3C%2Fg%3E%0A%3C%2Fsvg%3E%0A");">GCA_002211085.2</a></span></li>
<li><span style="font-family:arial,helvetica,sans-serif"><a
data-cke-saved-href="http://ensembl.gramene.org/Panicum_hallii_hal2"
href="http://ensembl.gramene.org/Panicum_hallii_hal2"
style="color: rgb(51, 71, 140);"><span style="color:#0000FF"><em>Panicum
hallii</em> HAL2</span></a>: PhalliiHAL_v2.1 assembly
and annotation <a
data-cke-saved-href="https://www.ebi.ac.uk/ena/data/view/GCA_003061485.1"
href="https://www.ebi.ac.uk/ena/data/view/GCA_003061485.1"
rel="external" style="color: rgb(51, 71, 140);
background-position: right center; background-repeat:
no-repeat; padding-right: 12px; background-image:
url("data:image/svg+xml,%3C%3Fxml%20version%3D%221.0%22%20encoding%3D%22UTF-8%22%3F%3E%3Csvg%20xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F2000%2Fsvg%22%20width%3D%2210%22%20height%3D%2210%22%3E%0A%20%20%3Cg%20transform%3D%22translate%28-826.429%20-698.791%29%22%3E%0A%20%20%20%20%3Crect%20width%3D%225.982%22%20height%3D%225.982%22%20x%3D%22826.929%22%20y%3D%22702.309%22%20fill%3D%22%23ffffff%22%20stroke%3D%22%23697ec9%22%2F%3E%0A%20%20%20%20%3Cg%3E%0A%20%20%20%20%20%20%3Cpath%20d%3D%22M831.194%20698.791h5.234v5.391l-1.571%201.545-1.31-1.31-2.725%202.725-2.689-2.689%202.808-2.808-1.311-1.311z%22%20fill%3D%22%23697ec9%22%2F%3E%0A%20%20%20%20%20%20%3Cpath%20d%3D%22M835.424%20699.795l.022%204.885-1.817-1.817-2.881%202.881-1.228-1.228%202.881-2.881-1.851-1.851z%22%20fill%3D%22%23ffffff%22%2F%3E%0A%20%20%20%20%3C%2Fg%3E%0A%20%20%3C%2Fg%3E%0A%3C%2Fsvg%3E%0A");">GCA_003061485.1</a></span></li>
</ol>
<ul>
<li><span style="font-family:arial,helvetica,sans-serif"><strong>Updated
genomes:</strong></span></li>
</ul>
<ol class="rteindent2">
<li><span style="font-family:arial,helvetica,sans-serif"><a
data-cke-saved-href="http://ensembl.gramene.org/oryza_sativa"
href="http://ensembl.gramene.org/oryza_sativa"><span
style="color:#0000FF"><em>Oryza sativa Japonica</em></span></a>:
updated nonOrganelle gene annotation from <a
data-cke-saved-href="https://rapdb.dna.affrc.go.jp"
href="https://rapdb.dna.affrc.go.jp" rel="external"><span
style="color:#0000FF;">RAP-DB</span></a> version
2018-11-26 and added stable_id mappings to previous
annotation.</span><br>
</li>
<li><a
data-cke-saved-href="http://ensembl.gramene.org/Solanum_lycopersicum"
href="http://ensembl.gramene.org/Solanum_lycopersicum"
style="color: rgb(51, 71, 140);"><span style="color:#0000FF"><em>Solanum
lycopersicum</em></span></a> (tomato): added ITAG3.0
unplaced gene models (Chr0)</li>
</ol>
<ul>
<li><span style="font-family:arial,helvetica,sans-serif"><strong>New
& Updated data: </strong></span></li>
</ul>
<ol class="rteindent2">
<li><span style="font-family:arial,helvetica,sans-serif"><em><a
data-cke-saved-href="http://ensembl.gramene.org/Triticum_aestivum/Info/Index"
href="http://ensembl.gramene.org/Triticum_aestivum/Info/Index"
style="color: rgb(204, 54, 0);"><span
style="color:#0000FF">Triticum aestivum</span></a></em> (bread
wheat): added 31,779 markers from the 35K Axiom SNP array
(provided by<span style="color:#0000FF;"> </span><a
data-cke-saved-href="http://www.cerealsdb.uk.net/cerealgenomics/CerealsDB"
href="http://www.cerealsdb.uk.net/cerealgenomics/CerealsDB"
rel="external"><span style="color:#0000FF;">CerealsDB</span></a>).</span><br>
</li>
<li><span style="font-family:arial,helvetica,sans-serif"><a
data-cke-saved-href="http://ensembl.gramene.org/Triticum_dicoccoides"
href="http://ensembl.gramene.org/Triticum_dicoccoides"><span
style="color:#0000FF"><em>Triticum dicoccoides</em></span></a><span
style="color:#0000FF"> </span>(Emma Zavitan wheat): added
polyploid view.</span></li>
<li><span style="font-family:arial,helvetica,sans-serif"><a
data-cke-saved-href="http://ensembl.gramene.org/Vigna_radiata"
href="http://ensembl.gramene.org/Vigna_radiata"
style="color: rgb(51, 71, 140);"><span style="color:#0000FF"><em>Vigna
radiata</em></span></a>: added stable_id mappings to
previous annotation.</span><br>
</li>
<li><span style="font-family:arial,helvetica,sans-serif"><em><a
data-cke-saved-href="http://ensembl.gramene.org/Physcomitrella_patens"
href="http://ensembl.gramene.org/Physcomitrella_patens"
style="color: rgb(51, 71, 140);"><span
style="color:#0000FF">Physcomitrella patens</span></a></em>:
added stable_id mappings to previous annotation.</span></li>
<li><span style="font-family:arial,helvetica,sans-serif">New <span
style="font-family:arial,helvetica,sans-serif"><a
data-cke-saved-href="http://news.gramene.org/curated_maize_v4_gene_models"
href="http://news.gramene.org/curated_maize_v4_gene_models"><span
style="color:#0000FF">manually curated maize gene models</span></a>
(custom genome track may be set up using this <a
data-cke-saved-href="ftp://ftp.gramene.org/pub/gramene/CURRENT_RELEASE/gff3/zea_mays/curated_apollo_annotations_maize_v4.gff3"
href="ftp://ftp.gramene.org/pub/gramene/CURRENT_RELEASE/gff3/zea_mays/curated_apollo_annotations_maize_v4.gff3"><span
style="color:#0000FF">GFF file</span></a>).</span></span></li>
<li><span style="font-family:arial,helvetica,sans-serif">New
whole-genome alignments for <a
data-cke-saved-href="http://ensembl.gramene.org/Actinidia_chinensis"
href="http://ensembl.gramene.org/Actinidia_chinensis"
style="color: rgb(51, 71, 140);"><em>A. chinensis</em></a>,
<a
data-cke-saved-href="http://ensembl.gramene.org/Panicum_hallii_fil2"
href="http://ensembl.gramene.org/Panicum_hallii_fil2"
style="color: rgb(51, 71, 140);"><em>P. hallii</em> FIL2</a> and
<a
data-cke-saved-href="http://ensembl.gramene.org/Panicum_hallii_hal2"
href="http://ensembl.gramene.org/Panicum_hallii_hal2"
style="color: rgb(51, 71, 140);"><em>P. hallii</em> HAL2</a>,
see <a data-cke-saved-href="#WGA"
href="http://news.gramene.org/node/496/edit?render=overlay#WGA"><span
style="color:#0000FF;">WGA section</span></a>.</span><br>
</li>
<li><span style="font-family:arial,helvetica,sans-serif">New
synteny data for <a
data-cke-saved-href="http://ensembl.gramene.org/Actinidia_chinensis"
href="http://ensembl.gramene.org/Actinidia_chinensis"
style="color: rgb(51, 71, 140);"><em>A. chinensis</em></a>, <a
data-cke-saved-href="http://ensembl.gramene.org/Panicum_hallii_fil2"
href="http://ensembl.gramene.org/Panicum_hallii_fil2"
style="color: rgb(51, 71, 140);"><em>P. hallii</em> FIL2</a>, <a
data-cke-saved-href="http://ensembl.gramene.org/Panicum_hallii_hal2"
href="http://ensembl.gramene.org/Panicum_hallii_hal2"
style="color: rgb(51, 71, 140);"><em>P. hallii</em> HAL2</a> and
<em><a
data-cke-saved-href="http://ensembl.gramene.org/Sorghum_bicolor/Info/Index"
href="http://ensembl.gramene.org/Sorghum_bicolor/Info/Index"><span
style="color:#0000FF;">Sorghum bicolor</span></a></em>,
see <a data-cke-saved-href="#Synteny"
href="http://news.gramene.org/node/496/edit?render=overlay#Synteny"><span
style="color:#0000FF;">Synteny section</span></a>.</span><br>
</li>
<li><span style="font-family:arial,helvetica,sans-serif"><a
data-cke-saved-href="http://ensembl.gramene.org/biomart/martview"
href="http://ensembl.gramene.org/biomart/martview"><span
style="color:#0000FF">BioMarts</span></a> for all gene and
variation data.</span></li>
<li><span style="font-family:arial,helvetica,sans-serif">Updated <a
data-cke-saved-href="ftp://ftp.gramene.org/pub/gramene/CURRENT_RELEASE/splitgenes/"
href="ftp://ftp.gramene.org/pub/gramene/CURRENT_RELEASE/splitgenes/"><span
style="color:#0000FF">split gene predictions</span></a>
from <a
data-cke-saved-href="http://ensemblgenomes.org/info/data/peptide_compara"
href="http://ensemblgenomes.org/info/data/peptide_compara"
rel="external"><span style="color:#0000FF;">peptide
comparative genomics</span></a>.</span><br>
</li>
</ol>
<ul>
<li><span style="font-size:12px"><strong>Updated software:</strong><span
style="font-family:arial,helvetica,sans-serif"> </span>Updated
genome browser, database schema, and API to <strong><a
data-cke-saved-href="http://www.ensembl.info/2019/04/09/ensembl-96-and-ensembl-genomes-43-are-out/"
href="http://www.ensembl.info/2019/04/09/ensembl-96-and-ensembl-genomes-43-are-out/"
rel="external"><span style="color:#0000FF">Ensembl
96 software</span></a>.</strong></span></li>
<li><strong>Genetic and Structural Variation : </strong><span
style="font-family:arial,helvetica,sans-serif">31,779 markers
from the 35K Axiom SNP array were added to the <em><a
data-cke-saved-href="http://ensembl.gramene.org/Triticum_aestivum/Info/Index"
href="http://ensembl.gramene.org/Triticum_aestivum/Info/Index"
style="color: rgb(204, 54, 0);"><span style="color:rgb(0,
0, 255)">Triticum aestivum</span></a></em> (Wheat)
genome</span><span
style="font-family:arial,helvetica,sans-serif">. They
were provided by </span><a
data-cke-saved-href="http://www.cerealsdb.uk.net/cerealgenomics/CerealsDB"
href="http://www.cerealsdb.uk.net/cerealgenomics/CerealsDB"
rel="external"><span style="color:#0000FF;">CerealsDB</span></a> and
designed by <span style="font-family:arial,helvetica,sans-serif;
font-size:12.96px">Affymetrix.</span><br>
</li>
<li><strong>Compara gene trees: </strong>The Ensembl Compara
GeneTree database updated. A total of 92,708 GeneTree families
were constructed comprising 1,948,793 individual protein coding
genes from 61 plant genomes with 2,158,277 input proteins.<br>
</li>
<li><strong>Identifying Split genes</strong>: <span
style="font-family:arial,helvetica,sans-serif">Updated split
genes for the current release are available on </span><a
data-cke-saved-href="ftp://ftp.gramene.org/pub/gramene/CURRENT_RELEASE/splitgenes/"
href="ftp://ftp.gramene.org/pub/gramene/CURRENT_RELEASE/splitgenes/"
style="font-family: arial, helvetica, sans-serif; font-size:
14px;"><span style="color:#0000FF">FTP site</span></a>. <span
style="font-family:arial,helvetica,sans-serif">These are
putative gene annotation artifacts (also known as contiguous
gene split models) and are based on the latest Ensembl Compara
Gene Tree database. </span></li>
<li><strong>Whole genome alignments and Synteny</strong>:
Kiwifruit and two Panicum genomes were included in the whole <a
data-cke-saved-href="http://ensembl.gramene.org/compara_analyses.html"
href="http://ensembl.gramene.org/compara_analyses.html"
style="box-sizing: border-box; color: rgb(68, 68, 68);
text-decoration-line: none;"><span style="color:rgb(0, 0,
255)">genomic alignments</span></a> and synteny data sets.</li>
</ul>
<hr>
<ul>
<li><strong>Plant Pathways</strong>
<ul>
<li><span style="font-family:arial,helvetica,sans-serif"><strong>Wesbite
updates: </strong><span style="font-size:14px"><span
style="color:rgb(0, 0, 0);
font-family:arial,helvetica,sans-serif">For user and
data security, SSL (Secure Sockets Layer) has now been
implemented on Plant Reactome. The entire site and all
services are now available over https. The latest
Plant Reactome pathway data has also been re-indexed
and made available via Gramene search.</span></span></span></li>
<li><span style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="color:rgb(0, 0, 0)"><strong>Curation of
reference rice pathways:</strong></span><span
style="color:rgb(0, 128, 0)"><strong> </strong></span></span></span>
<ul>
<li><span style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="color:#000000">We have added 4 newly
curated pathways, 2 updated pathways and
1 "container" pathway, resulting in a total of 298
reference rice pathways.</span></span></span></li>
<li><span style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="color:rgb(0, 0, 0)"><strong>New Pathways:</strong></span></span></span>
<ol>
<li><span style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="color:rgb(0, 0, 0)">Root hair
development</span></span></span></li>
<li><span style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="color:rgb(0, 0, 0)"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif">Phytic
Acid biosynthesis (lipid independent)</span></span></span></span></span></li>
<li><span style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="color:rgb(0, 0, 0)"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif">Response
to aluminum stress</span></span></span></span></span></span></span></li>
<li><span style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="color:rgb(0, 0, 0)"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif">Root-specific
gene-network of NAC10_TF induced
by drought, salinity, and ABA</span></span></span></span></span></span></span></span></span></li>
</ol>
</li>
<li><span style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="color:rgb(0, 0, 0)"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="color:rgb(0, 0, 0)"><strong>Updated
pathways</strong>:</span></span></span></span></span></span></span></span></span></span></span></span>
<ol>
<li><span style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="color:rgb(0, 0, 0)"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="color:rgb(0, 0, 0)">HSFA7-regulatory
network induced by drought
and ABA</span></span></span></span></span></span></span></span></span></span></span></span></li>
<li><span style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="color:rgb(0, 0, 0)"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="color:rgb(0, 0, 0)">SNAC1
transcription network
involved in drought and
salinity tolerance</span></span></span></span></span></span></span></span></span></span></span></span></li>
</ol>
</li>
<li><span style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="color:rgb(0, 0, 0)"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="color:rgb(0, 0, 0)"><span
style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif"><span
style="color:rgb(0, 0, 0)"><strong>Pathway
Projection Statistics:</strong></span><span
style="color:rgb(0, 128,
0)"><strong> </strong></span><span
style="color:#000000">We
have extended
orthology-based pathway
projections for three new
species: </span><a
data-cke-saved-href="http://plants.ensembl.org/Actinidia_chinensis"
href="http://plants.ensembl.org/Actinidia_chinensis" style="color:
#444444; text-decoration:
none;"><span
style="color:#993300"><em>Actinidia
chinensis</em></span></a> (kiwi
fruit)<span
style="color:#000000">, <span
style="color:#993300"><em><a
data-cke-saved-href="http://plants.ensembl.org/Panicum_hallii_fil2"
href="http://plants.ensembl.org/Panicum_hallii_fil2"
style="color:
#993300;">Panicum
hallii FIL2</a></em></span>
("Hall's panicgrass"), and
<em><span
style="color:#993300"><a
data-cke-saved-href="http://plants.ensembl.org/Panicum_hallii_hal2"
href="http://plants.ensembl.org/Panicum_hallii_hal2"
style="color:
#993300;">Panicum
hallii var. hallii
HAL2</a></span></em>.
Plant Reactome now hosts
pathway projections for 82
species ranging from
unicellular autotrophs to
higher plants.</span></span></span></span></span></span></span></span></span></span></span></span></span></span></span><br>
</li>
</ul>
</li>
</ul>
</li>
</ul>
<p><span style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif">Please let us
know if you have questions or suggestions. </span></span></p>
<p><span style="font-size:14px"><span
style="font-family:arial,helvetica,sans-serif">The Gramene
Team<br>
<a data-cke-saved-href="http://www.gramene.org"
href="http://www.gramene.org"><span style="color:#0000FF;">www.gramene.org</span></a></span></span><br>
</p>
<pre class="moz-signature" cols="72">--
Pankaj Jaiswal, PhD
Associate Professor
Dept. of Botany and Plant Pathology
2082 Cordley Hall
Oregon State University
Corvallis, OR, 97331
USA
Ph.: +1-541-737-8471
Fax: +1-541-737-3573
email: <a class="moz-txt-link-abbreviated" href="mailto:jaiswalp@oregonstate.edu">jaiswalp@oregonstate.edu</a>
Web: <a class="moz-txt-link-freetext" href="http://jaiswallab.cgrb.oregonstate.edu">http://jaiswallab.cgrb.oregonstate.edu</a></pre>
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