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<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt;line-height:
normal"><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
mso-fareast-font-family:"Times New
Roman";color:black;mso-themecolor:text1">Hi Everyone,</span></p>
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;
line-height:normal"><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
mso-fareast-font-family:"Times New
Roman";color:black;mso-themecolor:text1">The
Gramene Database (<a class="moz-txt-link-abbreviated" href="http://www.gramene.org">www.gramene.org</a>) is pleased to announce its<b>
<a href="http://gramene.org/release-notes-59" target="_top"><span
style="color:black;mso-themecolor:text1">Release #59</span></a></b>
with the
Genome section providing access to information on 2,156,459
genes and 57
reference plant genomes. 1,860,691 protein-coding genes are
organized in 96,500
gene families. The
Plant Reactome -- Gramene's pathway portal -- introduces its new
website <a href="http://plantreactome.gramene.org/"><span
style="color:black;mso-themecolor:
text1">http://plantreactome.gramene.org/</span></a>
for improved user engagement
and provides 14 new curated pathways. The gene orthology-based
projection of
pathways now extends to 78 species representing the plant tree
of life. <br>
</span></p>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt;line-height:
normal"><b><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
mso-fareast-font-family:"Times New
Roman";color:black;mso-themecolor:text1">GENOMES:</span></b><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
"Times New
Roman";color:black;mso-themecolor:text1"></span></p>
<ul type="disc">
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l2
level1 lfo1;
 tab-stops:list .5in"><b><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
 mso-fareast-font-family:"Times
New Roman"">New genomes</span></b><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""> </span></li>
<ul type="circle">
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l2
level2 lfo1;
 tab-stops:list 1.0in"><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
 mso-fareast-font-family:"Times
New Roman""><a
href="http://ensembl.gramene.org/Triticum_dicoccoides/Info/Index"
target="_top"><i><span
style="color:black;mso-themecolor:text1">Triticum
dicoccoides</span></i></a> (emmer wheat) </span></li>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l2
level2 lfo1;
 tab-stops:list 1.0in"><i><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;

mso-fareast-font-family:"Times New Roman""><a
href="http://ensembl.gramene.org/Vigna_radiata"
target="_top"><span
style="color:black;mso-themecolor:text1">Vigna radiata</span></a> (</span></i><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman"">mungbean<i>) </i></span></li>
</ul>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l2
level1 lfo1;
 tab-stops:list .5in"><b><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
 mso-fareast-font-family:"Times
New Roman"">Updated genomes</span></b><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""> </span></li>
<ul type="circle">
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l2
level2 lfo1;
 tab-stops:list 1.0in"><i><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;

mso-fareast-font-family:"Times New Roman""><a
href="http://ensembl.gramene.org/Triticum_aestivum"
target="_top"><span
style="color:black;mso-themecolor:text1">Triticum
aestivum</span></a></span></i><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""> (bread wheat)</span></li>
</ul>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l2
level1 lfo1;
 tab-stops:list .5in"><b><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
 mso-fareast-font-family:"Times
New Roman"">Retracted genome</span></b><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""> </span></li>
<ul type="circle">
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l2
level2 lfo1;
 tab-stops:list 1.0in"><i><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;

mso-fareast-font-family:"Times New Roman"">Cajanus
cajan</span></i><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""> (pigeonpea) was removed from this release,
pending import corrections.</span></li>
</ul>
</ul>
<ul type="disc">
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l1
level1 lfo2;
 tab-stops:list .5in"><b><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
 mso-fareast-font-family:"Times
New Roman"">New & Updated data</span></b><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""> </span></li>
<ul type="circle">
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l1
level2 lfo2;
 tab-stops:list 1.0in"><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
 mso-fareast-font-family:"Times
New Roman"">The updated genomes include updated Whole
Genome Alignments</span></li>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l1
level2 lfo2;
 tab-stops:list 1.0in"><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
 mso-fareast-font-family:"Times
New Roman"">Updated gene trees and homologies</span></li>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l1
level2 lfo2;
 tab-stops:list 1.0in"><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
 mso-fareast-font-family:"Times
New Roman"">New and updated synteny maps</span></li>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l1
level2 lfo2;
 tab-stops:list 1.0in"><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
 mso-fareast-font-family:"Times
New Roman"">Updated <a
href="ftp://ftp.gramene.org/pub/gramene/CURRENT_RELEASE/splitgenes/"
target="_top"><span
style="color:black;mso-themecolor:text1">split gene
predictions</span></a> from <a
href="http://ensemblgenomes.org/info/data/peptide_compara"
target="_top"><span
style="color:black;mso-themecolor:text1">peptide
comparative genomics</span></a></span></li>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l1
level2 lfo2;
 tab-stops:list 1.0in"><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
 mso-fareast-font-family:"Times
New Roman"">Updated protein features</span></li>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l1
level2 lfo2;
 tab-stops:list 1.0in"><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
 mso-fareast-font-family:"Times
New Roman"">Updated <a
href="http://ensembl.gramene.org/biomart/martview"
target="_top"><span
style="color:black;mso-themecolor:text1">BioMarts</span></a></span></li>
</ul>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l1
level1 lfo2;
 tab-stops:list .5in"><b><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
 mso-fareast-font-family:"Times
New Roman"">Updated software</span></b><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""> </span></li>
<ul type="circle">
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l1
level2 lfo2;
 tab-stops:list 1.0in"><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
 mso-fareast-font-family:"Times
New Roman"">Updated genome browser, database schema,
Mart and API to <a
href="http://www.ensembl.info/2018/10/03/ensembl-94-is-out/"
target="_top"><span
style="color:black;mso-themecolor:text1">Ensembl 94
software</span></a></span></li>
</ul>
</ul>
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;
line-height:normal"><b><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
mso-fareast-font-family:"Times New
Roman";color:black;mso-themecolor:text1">PATHWAYS</span></b><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
"Times New
Roman";color:black;mso-themecolor:text1"></span></p>
<ul type="disc">
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l0
level1 lfo3;
 tab-stops:list .5in"><b><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
 mso-fareast-font-family:"Times
New Roman"">Website:</span></b><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""> </span></li>
<ul type="circle">
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l0
level2 lfo3;
 tab-stops:list 1.0in"><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
 mso-fareast-font-family:"Times
New Roman"">New enhanced website <a
href="http://plantreactome.gramene.org"><span
style="color:black;
 mso-themecolor:text1">http://plantreactome.gramene.org</span></a></span></li>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l0
level2 lfo3;
 tab-stops:list 1.0in"><span
style="font-size:10.5pt;font-family:"Arial",sans-serif">Users
can import/overlay gene-gene interaction data filtered by a
confidence score (where available). This is done by enabling
a threshold filter to be selected by the user in the Pathway
Browser when viewing the interactor overlay. Try an example
<a
href="http://plantreactome.gramene.org/PathwayBrowser/#/R-ATH-5633340&SEL=R-ATH-5633332&PATH=R-ATH-2744345,R-ATH-2744343&DTAB=MT"><span
style="color:black;mso-themecolor:text1">here</span></a>.</span><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""></span></li>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l0
level2 lfo3;
 tab-stops:list 1.0in"><span
style="font-size:10.5pt;font-family:"Arial",sans-serif">The
majority of the gene-gene interaction data is hosted in
Plant Reactome. A part of it is pulled remotely from<a
href="https://www.ebi.ac.uk/intact/"><span
style="color:black;mso-themecolor:text1"> EBI-Intact </span></a>and
<a href="http://bar.utoronto.ca/"><span
style="color:black;mso-themecolor:
 text1">BAR</span></a>
using the <a
href="http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action=STATUS"><span
style="color:black;mso-themecolor:text1">PSICQUIC</span></a>
webservices.</span><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""></span></li>
</ul>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l0
level1 lfo3;
 tab-stops:list .5in"><b><span
style="font-size:10.5pt;font-family:"Arial",sans-serif;

mso-fareast-font-family:"Times New Roman"">New
pathways:</span></b><span
style="font-size:10.5pt;font-family:"Arial",sans-serif;mso-fareast-font-family:

"Times New Roman""> Following 14 new reference
pathways were added. Browse them at <a
href="http://plantreactome.gramene.org/PathwayBrowser/"><span
style="color:black;mso-themecolor:text1">http://plantreactome.gramene.org/PathwayBrowser/</span></a>.
We encourage users to suggest updates and critiques.</span><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""></span></li>
<ul type="circle">
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l0
level2 lfo3;
 tab-stops:list 1.0in"><span
style="font-family:"Arial",sans-serif;

mso-fareast-font-family:"Times New Roman"">Tricin
biosynthesis</span><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""></span></li>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l0
level2 lfo3;
 tab-stops:list 1.0in"><span
style="font-family:"Arial",sans-serif;

mso-fareast-font-family:"Times New Roman"">Lycopene
catabolism</span><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""></span></li>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l0
level2 lfo3;
 tab-stops:list 1.0in"><span
style="font-family:"Arial",sans-serif;

mso-fareast-font-family:"Times New Roman"">Oryzalyde
A biosynthesis</span><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""></span></li>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l0
level2 lfo3;
 tab-stops:list 1.0in"><span
style="font-family:"Arial",sans-serif;

mso-fareast-font-family:"Times New Roman"">Abscisic
acid homeostasis</span><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""></span></li>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l0
level2 lfo3;
 tab-stops:list 1.0in"><span
style="font-family:"Arial",sans-serif;

mso-fareast-font-family:"Times New Roman"">Reactive
oxygen species (ROS) homeostasis</span><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
 mso-fareast-font-family:"Times
New Roman""></span></li>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l0
level2 lfo3;
 tab-stops:list 1.0in"><span
style="font-family:"Arial",sans-serif;

mso-fareast-font-family:"Times New Roman"">Generation
of superoxide radicals</span><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
 mso-fareast-font-family:"Times
New Roman""></span></li>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l0
level2 lfo3;
 tab-stops:list 1.0in"><span
style="font-family:"Arial",sans-serif;

mso-fareast-font-family:"Times New Roman"">Removal
of superoxide radicals</span><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""></span></li>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l0
level2 lfo3;
 tab-stops:list 1.0in"><span
style="font-family:"Arial",sans-serif;

mso-fareast-font-family:"Times New Roman"">Valine
degradation</span><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""></span></li>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l0
level2 lfo3;
 tab-stops:list 1.0in"><span
style="font-family:"Arial",sans-serif;

mso-fareast-font-family:"Times New Roman"">Cysteine
degradation</span><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""></span></li>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l0
level2 lfo3;
 tab-stops:list 1.0in"><span
style="font-family:"Arial",sans-serif;

mso-fareast-font-family:"Times New Roman"">Recognition
of fungal and bacterial pathogens and immunity response</span><span
style="font-size:
 12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:"Times New
Roman""></span></li>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l0
level2 lfo3;
 tab-stops:list 1.0in"><span
style="font-family:"Arial",sans-serif;

mso-fareast-font-family:"Times New Roman"">Reproductive
meristem phase change</span><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
 mso-fareast-font-family:"Times
New Roman""></span></li>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l0
level2 lfo3;
 tab-stops:list 1.0in"><span
style="font-family:"Arial",sans-serif;

mso-fareast-font-family:"Times New Roman"">Flower
development</span><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""></span></li>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l0
level2 lfo3;
 tab-stops:list 1.0in"><span
style="font-family:"Arial",sans-serif;

mso-fareast-font-family:"Times New Roman"">Floral
bract development</span><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""></span></li>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l0
level2 lfo3;
 tab-stops:list 1.0in"><span
style="font-family:"Arial",sans-serif;

mso-fareast-font-family:"Times New Roman"">Seed
development</span><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""></span></li>
</ul>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l0
level1 lfo3;
 tab-stops:list .5in"><b><span
style="font-size:10.5pt;font-family:"Arial",sans-serif;

mso-fareast-font-family:"Times New Roman"">Pathway
projections: </span></b><span
style="font-size:10.5pt;font-family:"Arial",sans-serif;mso-fareast-font-family:

"Times New Roman"">Plant Reactome now hosts pathway
projections for 78 species ranging from unicellular autotrophs
to higher plants. These include 4 new species: <i><a
href="http://ensembl.gramene.org/Daucus_carota"
target="_top"><span
style="color:black;mso-themecolor:text1">Daucus carota</span></a> </i>(carrot), <a
href="http://ensembl.gramene.org/Vigna_radiata/Info/Index"><i><span
style="color:black;mso-themecolor:text1">Vigna radiata</span></i></a><i> (mung
bean),</i> <a
href="http://ensembl.gramene.org/Vigna_angularis"
target="_top"><i><span
style="color:black;mso-themecolor:text1">Vigna angularis</span></i></a> (adzuki
bean) and <i><a
href="http://ensembl.gramene.org/Triticum_dicoccoides/Info/Index"><span
style="color:black;mso-themecolor:text1">Triticum
dicoccoides</span></a> </i>(Emmer wheat). In addition,
we have revised pathways for <a
href="http://ensembl.gramene.org/Triticum_aestivum"
target="_top"><i><span
style="color:black;mso-themecolor:text1">Triticum
aestivum</span></i></a> (bread wheat), based on its
recent genome update (IWGSC RefSeq v1.0).</span><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""></span></li>
<li class="MsoNormal"
style="color:black;mso-themecolor:text1;mso-margin-top-alt:

auto;mso-margin-bottom-alt:auto;line-height:normal;mso-list:l0
level1 lfo3;
 tab-stops:list .5in"><b><span
style="font-size:10.5pt;font-family:"Arial",sans-serif;

mso-fareast-font-family:"Times New Roman"">Analysis
tools: </span></b><span
style="font-size:10.5pt;font-family:"Arial",sans-serif;mso-fareast-font-family:

"Times New Roman"">Plant Reactome provides </span><span
style="font-size:

10.5pt;font-family:"Arial",sans-serif"><a
href="http://plantreactome.gramene.org/PathwayBrowser/#TOOL=AT"><span
style="color:black;mso-themecolor:text1">pathway
enrichment and species comparison tools</span></a></span><span
style="font-size:10.5pt;

font-family:"Arial",sans-serif;mso-fareast-font-family:"Times
New Roman""> for analyzing your omics data. The
interaction overlays now include ~600,000 hosted gene-gene
interactions for <i>Arabidopsis thaliana</i>.</span><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;mso-fareast-font-family:
 "Times
New Roman""></span></li>
</ul>
<p class="MsoNormal"
style="margin-bottom:0in;margin-bottom:.0001pt;line-height:
normal"><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
mso-fareast-font-family:"Times New
Roman";color:black;mso-themecolor:text1">Detailed
release notes are available at <a
href="http://gramene.org/release-notes-59"><span
style="color:black;mso-themecolor:text1">http://gramene.org/release-notes-59</span></a>.
<br>
<br>
The genome databases were built in direct collaboration with
Ensembl Plants and
the Plant Reactome database was produced in collaboration with
the Reactome
project.</span></p>
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;
line-height:normal"><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
mso-fareast-font-family:"Times New
Roman";color:black;mso-themecolor:text1">Please
let us know if you have questions or suggestions.</span></p>
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;
line-height:normal"><span
style="font-size:12.0pt;font-family:"Times New
Roman",serif;
mso-fareast-font-family:"Times New
Roman";color:black;mso-themecolor:text1">The
Gramene Team<a href="http://jaiswallab.cgrb.oregonstate.edu"><span
style="color:black;mso-themecolor:text1"><br>
www.gramene.org</span></a></span></p>
<p class="MsoNormal"><span style="color:black;mso-themecolor:text1"> </span></p>
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<pre class="moz-signature" cols="72">
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