<div class="gmail_quote">On Mon, Jul 18, 2011 at 5:41 PM, Scott Cain <span dir="ltr"><<a href="mailto:scott@scottcain.net">scott@scottcain.net</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
Hi Ben,<br>
<br>
I think there is a future for SADI in GMOD. If you haven't already,<br>
please take a look at:<br>
<br>
<a href="http://gmod.org/wiki/GMOD_Membership#Software" target="_blank">http://gmod.org/wiki/GMOD_Membership#Software</a><br>
<br>
Ideally, I'd like to see SADI talking to Chado rather than<br>
SeqFeature::Store (or actually, in addition to, as there is no need to<br>
do away with SFS connectivity), since when you are limited to SFS, you<br>
are limiting the amount of information you can get to sequence<br>
annotations, while a Chado database could provide so much more, like<br>
genotypes, phenotypes, and natural diversity data (and stocks,<br>
publications, controlled vocabularies...)<br>
<br>
I suggested at BOSC that you consider trying Bio::DB::Das::Chado for<br>
SADI, and I still think that is a good idea, though that solution<br>
still suffers from the same limitation that connecting to a SFS<br>
database does, namely that it would be limited to sequence<br>
annotations. However, I would hope that this would just be a first<br>
step, and as more functionality for accessing different data types<br>
could evolve from there.<br>
<br>
How does that sound?<br>
<br>
Scott<br>
<div><div></div><div class="h5"><br></div></div></blockquote><div><br>Hi Scott,<br><br>No problem about adding Chado support. That shouldn't be a big deal and I would like to do it anyway. Also, I am cool with the requirements on the GMOD members page.<br>
<br>Later!<br><br>-- Ben <br><br> <br></div><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;"><div><div class="h5">
<br>
On Sat, Jul 16, 2011 at 9:02 PM, Ben Vandervalk <<a href="mailto:ben.vvalk@gmail.com">ben.vvalk@gmail.com</a>> wrote:<br>
> Hi GMOD help,<br>
><br>
> I have just released the initial version of "SADI for GMOD", and I would<br>
> like to nominate it as an official GMOD component. SADI for GMOD is a set of<br>
> Perl CGI scripts which provide an RDF view of a Bio::DB::SeqFeature::Store<br>
> database. A basic description of the project is here:<br>
><br>
> <a href="http://code.google.com/p/sadi/wiki/SADIforGMOD" target="_blank">http://code.google.com/p/sadi/wiki/SADIforGMOD</a><br>
><br>
> I would love to put this information on the GMOD wiki, as that would greatly<br>
> increase the project's visibilty.<br>
><br>
> I am employed to work on SADI for the next year or so, so I am in a very<br>
> good position to provide support and further development for SADI for GMOD.<br>
> Also, I am game to continue supporting the project in the longer term as<br>
> well.<br>
><br>
> Thanks for your consideration!<br>
><br>
> -- Ben Vandervalk<br>
><br>
<br>
<br>
<br>
</div></div><font color="#888888">--<br>
------------------------------------------------------------------------<br>
Scott Cain, Ph. D. scott at scottcain dot net<br>
GMOD Coordinator (<a href="http://gmod.org/" target="_blank">http://gmod.org/</a>) 216-392-3087<br>
Ontario Institute for Cancer Research<br>
</font></blockquote></div><br>