<html xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:w="urn:schemas-microsoft-com:office:word" xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" xmlns="http://www.w3.org/TR/REC-html40"><head><meta http-equiv=Content-Type content="text/html; charset=us-ascii"><meta name=Generator content="Microsoft Word 14 (filtered medium)"><style><!--
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</o:shapelayout></xml><![endif]--></head><body lang=EN-US link=blue vlink=purple><div class=WordSection1><p class=MsoNormal>Hello,<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>I’ve (mostly) successfully installed gbrowse 2.33 on a server in our lab. I can access index.html from other computers on our network, and generally all the links which do not redirect to cgi scripts run fine. However, none of the examples (for instance all the different yeast examples) come up with the expected interface. The logs for the httpd server show these errors when I try to click on the “simple” yeast example:<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>[Wed Jul 13 11:39:12 2011] [error] [client 10.254.10.67] Use of uninitialized value in join or string at /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi/Bio/Graphics/Browser2/DataSource.pm line 878., referer: http://10.255.6.59/<o:p></o:p></p><p class=MsoNormal>[Wed Jul 13 11:39:12 2011] [error] [client 10.254.10.67] Unknown database defined for general at /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi/Bio/Graphics/Browser2/DataSource.pm line 884., referer: http://10.255.6.59/<o:p></o:p></p><p class=MsoNormal>[Wed Jul 13 11:39:12 2011] [error] [client 10.254.10.67] Could not open database: Can't call method "new" on an undefined value at /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi/Bio/Graphics/Browser2/DataBase.pm line 45., referer: http://10.255.6.59/<o:p></o:p></p><p class=MsoNormal>[Wed Jul 13 11:39:12 2011] [error] [client 10.254.10.67] Premature end of script headers: gbrowse, referer: <a href="http://10.255.6.59/">http://10.255.6.59/</a><o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>The server is running centos 5.5, when I installed gbrowse I used this command:<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal># perl Makefile.PL CONF=/etc/httpd HTDOCS=/var/www/html CGIBIN=/var/www/cgi-bin DO_XS=1<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Then:<o:p></o:p></p><p class=MsoNormal># ./Build test<o:p></o:p></p><p class=MsoNormal># ./Build install<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Anyone know what is going on?? <o:p></o:p></p><p class=MsoNormal><br>Thanks<o:p></o:p></p><p class=MsoNormal>~josh<o:p></o:p></p></div><PRE>**********************************************************************
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