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<p>Hello,</p>
<p>I am head of a small bioinformatics core facility. We have recently started to perform NGS data analysis services for our customers. Now we want to be able to create a web-accessible database for each customer, and I thought GMOD may be a good platform.</p>
<p>Our current projects have to do with transcriptome sequencing of novel eukaryotic organisms (plants, arthropods, other). Typically, several RNA libraries from different tissues or conditions are sequenced. We mix all of them for de novo assembly, annotate
the achieved 'reference' transcriptome, in some cases compare to other genomes, and eventually perform differential expression analysis between the libraries.</p>
<p>We would like to allow our users, at the end of the analysis, to query their transcriptome, see the raw as well as processed data per gene or contig, see the gene structure, differential expression results, run blast against their transcriptome etc.</p>
<p>I will be happy to know if you can recommend on example projects that used GMOD for a similar purpose, and if you have a documentation on a suggested pipeline for the database development.</p>
<p>Thank you in advance,</p>
<p> Vered Caspi</p>
<p><a href="http://bioinfo.bgu.ac.il">http://bioinfo.bgu.ac.il</a></p>
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