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<p class="MsoNormal">Hi,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I am trying to get chromosome searches, e.g: chr1:12344..7890123, to work within gbrowse2. My system is setup with 2 databases: hg18_scaffolds, and hg18_annotations. In hg18_scaffolds, I loaded the chromosome definitions from a gff3 file
(e.g. chr1 hg18 chromosome 1 247249719 . . . ID=chr1;Name=Chr1). In the hg18_annotations database, I loaded all the annotations that I require. The gff3 files for the annotations database do not contain any chromosome definitions. However
when I do this, the search, chr1:12344..7890123, returns an error: the landmark named chr1:12344..7890123 is not recognized. If I perform a different search, e.g. a clone name from the annotations database, this search will return the expected result. If
I load everything (chromosome definitions, and annotations) into 1 database, both searches work properly.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Is there any way to keep my desired schema, that is, the 2 separate databases, and have searches such as chr1:12344..7890123 work?<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Thanks,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><span style="font-size:13.5pt;font-family:"Microsoft Sans Serif","sans-serif"">Nigel Wilson</span>
<br>
<span style="font-size:10.0pt;font-family:"Microsoft Sans Serif","sans-serif"">_________________________________________________</span>
<br>
<span style="font-size:10.0pt;font-family:"Microsoft Sans Serif","sans-serif"">Bioinformatics Analyst</span>
<br>
<span style="font-size:10.0pt;font-family:"Microsoft Sans Serif","sans-serif"">The Centre for Applied Genomics</span><o:p></o:p></p>
<p class="MsoNormal">The Hospital for Sick Children, MaRS Building - East Tower<br>
<span style="font-size:10.0pt">­­­­­­­­­­­</span><span style="font-size:10.0pt;font-family:Wingdings">(</span><span style="font-size:
10.0pt">: 416.813.7032</span><br>
<b><span style="font-size:10.0pt;font-family:Wingdings">*</span></b><span style="font-size:10.0pt">: 101 College St., Rm 14-701, Toronto, Ontario M5G 1L7</span><o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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