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Hi Dave, <div> Phytozome currently incorporates GMOD components Gbrowse and BioMart, open source components Jalview, Lucene, MView, and will be integrating GMOD components Galaxy and Chado over the next 12 months.</div><div><br></div><div>-David</div><div><br><div> <span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div><span class="Apple-style-span" style="font-size: 12px; "><div>David M. Goodstein, Ph.D.</div><div>Joint Genome Institute / Lawrence Berkeley National Lab</div><div>Center for Integrative Genomics / UCBerkeley</div><div><a href="http://www.phytozome.net">http://www.phytozome.net</a></div></span><div><br></div></div></span></span><br class="Apple-interchange-newline"> </div><br><div><div>On 10 Aug 2010, at 14:06, Bill Cannan wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">Hi Guys,<br><br>I've added David Goodstein to the conversation. He's the hiring manager for the position. David, besides GBrowse, can you let Scot and Dave know what other GMOD components Phytozome ustilizes, if any. <br> <br>Thanks,<br><br>Bill<br><br><br><br><div class="gmail_quote">On Tue, Aug 10, 2010 at 1:52 PM, Dave Clements <span dir="ltr"><<a href="mailto:clements@nescent.org">clements@nescent.org</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"> Hi Scott, Bill,<br><br>I'm headed out the door in 10 minutes. Phytozome is a heavy GBrowse user. Bill, are there any other GMOD components in use at Phytozome? This info helps make the posting more relevant to the GMOD crowd.<br> <br>Scott, can you post this?<br><br>Thanks,<br><br>Dave C<div><div></div><div class="h5"><br><br><br><div class="gmail_quote">On Tue, Aug 10, 2010 at 1:35 PM, Bill Cannan <span dir="ltr"><<a href="mailto:wrcannan@lbl.gov" target="_blank">wrcannan@lbl.gov</a>></span> wrote:<br> <blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">The DOE Joint Genome Institute (a division of the Berkeley Lab) currently has a Web Developer position available withing their Plant Genomics Group. I was wondering if it is possible to post the position on GMOD? <br> <br>Attached is the job text, please let me know if you have any questions? Thanks, Bill<br><br><br>An exciting opportunity is available in the Phytozome development team within the Joint Genome Institute's Computational and Plant Genomic group. Phytozome (<a href="http://www.phytozome.net/" target="_blank">http://www.phytozome.net</a>) is the public portal to JGI's extensive plant genome data and analysis, providing sophisticated data access and visualization tools for both experienced and novice plant biologists worldwide. The developer in this position will be responsible for creating intuitive, easily navigable, cross-browser compatible web interfaces, using PHP, CSS, and advanced Javascript. Both the absolute quantity and diversity of plant genomic data produced and integrated by the JGI will be increasing dramatically over the next few years. This is an opportunity to apply your web design and coding skills to an area of biological research undergoing explosive growth and change, working with the JGI's scientists, computational biologists, and developers in a state-of-the-art computational environment.<br><br><b>Specific Job Duties</b><br><br>- Debug, maintain, extend, and redesign various PHP-based components of the Phytozome web portal.<br>- Develop code that is lightweight, cross-browser-platform compatible, and fast.<br>- Interface with end-users to gather feedback and requirements.<br>- Follow Software Development best practices including: frequent testing and deployment, source/version control, issue tracking.<br>- Respond to software defect reports, requests for new features, or ad hoc requests.<br>- Troubeshoot basic system problems.<br><br><b>Qualifications</b><br><br>- Typically requires a B.S. in microbiology, bioinformatics, computational biology, computer science or related discipline, or equivalent experience.<br>- Demonstrated experience producing effective web sites with creative designs. <br>- Expertise in PHP, HTML, CSS, Javascript, AJAX.<br>- Experience coding with one or more modern Javascript toolkits: GWT, Dojo, jQuery, YUI, etc.<br>- Experience with one or more source control systems: CVS, Subversion, Git.<br>- Comfort and experience developing in a UN*X/Mac environment.<br>- Ability to work somewhat independently as well as part of a diverse team. Good oral and written communication skills.<br><br><b>How to Apply</b><br>To apply from this page, click the link (below) to be redirected to the lab job posting, then follow the on-line instructions to complete the application process. As part of the online application process, please submit a single attachment that includes both your resume and a cover letter. Please be sure to reference where you found out about the position.<br><br><a href="http://careers.crijob.com/lbnlcareers/detailsRedirect.asp?jid=24813&p=1" target="_blank">http://careers.crijob.com/lbnlcareers/detailsRedirect.asp?jid=24813&p=1</a><br><br clear="all"> Berkeley Lab is an affirmative action/equal opportunity employer committed to the development of a diverse workforce.<br><font color="#888888">-- </font><br clear="all"><font color="#888888"><br>-- <br><br> </font></blockquote></div><br><br clear="all"><br></div></div><font color="#888888">-- <br><a href="http://gmod.org/wiki/GMOD_News" target="_blank">http://gmod.org/wiki/GMOD_News</a><br><a href="http://gmod.org/wiki/GMOD_Europe_2010" target="_blank">http://gmod.org/wiki/GMOD_Europe_2010</a><br> <a href="http://gmod.org/wiki/GMOD_Evo_Hackathon" target="_blank">http://gmod.org/wiki/GMOD_Evo_Hackathon</a><br><a href="http://gmod.org/wiki/Help_Desk_Feedback" target="_blank">http://gmod.org/wiki/Help_Desk_Feedback</a><br> </font></blockquote></div><br><br clear="all"><br>-- <br>BILL CANNAN<br>Sr. HR Division Partner / Recruiting Consultant<br>Dept of Energy- Joint Genome Institute<br><a href="http://www.jgi.doe.gov">www.jgi.doe.gov</a><br> 2800 Mitchell Drive<br>Walnut Creek, CA 94598<br>(925) 296-5682<br><a href="mailto:wrcannan@lbl.gov">wrcannan@lbl.gov</a><br></blockquote></div><br></div></body></html>