Hello all,<br><br>This is just a reminder to send any comments on ISGA in the next three days.<br><br>Thanks,<br><br>Dave C<br><br><div class="gmail_quote">On Thu, Jul 29, 2010 at 11:07 AM, Dave Clements, GMOD Help Desk <span dir="ltr"><<a href="mailto:help@gmod.org">help@gmod.org</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">Hello all,<br>
<br>I would like to nominate ISGA for membership in GMOD.
ISGA is a bioinformatics pipeline service based on the Ergatis workflow
system.
ISGA comes with prokaryotic
annotation and assembly pipelines and offers an intuitive
interface for biologists to run and customize pipelines. ISGA also
integrates tools such as GBrowse and BLAST for visualizing and analyzing
pipeline results. Since ISGA utilizes Ergatis, ISGA pipelines can be submitted
back to the Ergatis community and Ergatis pipelines can be adapted
to use ISGA.<br><br>ISGA (pronounced "I-S-G-A") was created at Indiana
University's Center for Genomics and Bioinformatics (CGB) by Chris
Hemmerich, Aaron Buechlein, Ram Podicheti, Kashi Revanna, and Qunfeng
Dong. CGB also hosts a public installation of ISGA (see Links below).<br>
<br>I believe that <span>ISGA</span> meets all of GMOD's membership requirements (see <a href="http://gmod.org/wiki/GMOD_Membership#Requirements" target="_blank">http://gmod.org/wiki/GMOD_Membership#Requirements</a>). The CGB is willing to support ISGA for at least 2 years.<br>
<br><span>ISGA could be useful to anyone
working with complex pipelines and is directly applicable to existing
and potential Ergatis users. </span>This <span>nomination</span> is going to the Ergatis and DIYA lists, and to
the developers of other GMOD components related to computational
pipelines. If you have any feedback or comments on <span>ISGA</span>
becoming a part of GMOD, please respond on list or send mail directly
to the help desk, by the end of August 6.<br>
<br>Thanks,<br><br>Dave C <br clear="all"><br>ISGA Home Page, Tutorials, and FAQ<br>
<a href="http://isga.cgb.indiana.edu/" target="_blank">http://isga.cgb.indiana.edu/</a> <br>
<a href="http://isga.cgb.indiana.edu/Help/Tutorial" target="_blank">http://isga.cgb.indiana.edu/Help/Tutorial</a><br>
<a href="http://isga.cgb.indiana.edu/Help/FAQ" target="_blank">http://isga.cgb.indiana.edu/Help/FAQ</a><br>
Paper<br>
<a href="http://bioinformatics.oxfordjournals.org/cgi/content/abstract/26/8/1122" target="_blank">http://bioinformatics.oxfordjournals.org/cgi/content/abstract/26/8/1122</a><br>
Posters/Presentations<br>
<a href="http://gmod.org/wiki/Image:NGSTranscriptomeISGAErgatis.pdf" target="_blank">http://gmod.org/wiki/Image:NGSTranscriptomeISGAErgatis.pdf</a><br>
<a href="http://gmod.org/wiki/Image:ISGAISMB2010Poster.pdf" target="_blank">http://gmod.org/wiki/Image:ISGAISMB2010Poster.pdf</a><br>
<a href="http://gmod.org/wiki/Image:Jan2010ErgatisForBiologists.pdf" target="_blank">http://gmod.org/wiki/Image:Jan2010ErgatisForBiologists.pdf</a><br>
Ergatis<br>
<a href="http://gmod.org/wiki/Ergatis" target="_blank">http://gmod.org/wiki/Ergatis</a><br> <a href="http://ergatis.sourceforge.net/" target="_blank">http://ergatis.sourceforge.net/</a><br>
GMOD Membership Requirements<br> <a href="http://gmod.org/wiki/GMOD_Membership#Requirements" target="_blank">http://gmod.org/wiki/GMOD_Membership#Requirements</a><div><br></div><font color="#888888"><br>-- <br>===> PLEASE KEEP RESPONSES ON THE LIST <===<br>
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<br>
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