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Thank you!<br>
<br>
One more question regarding uploading files that are readable by
gbrowse instances. I am creating a balloon that appears on hover, and
I do see that I can refer to individual features names, start sites,
end sites, landmark, and the source by using variables such as $name,
$start, $end, $class, and $source. However, I am unable to refer to
self-created attributes in the ninth column of the gff3 file. For
example, if in the ninth column I have <br>
<br>
Sequence=ATCGAT<br>
<br>
and I put $sequence into the display part of balloon hover, then it
just displays "$sequence". Is there any way to work around this and
display self created attributes?<br>
<br>
Also, is it possible to embed an image into the balloon itself?<br>
<br>
I also want to make sure you keep in mind that these are just gff3
files that I am uploading to a plasmodb gbrowse - I am not hosting the
gbrowse myself.<br>
<br>
Thanks again,<br>
<br>
Rohan Bansal<br>
<br>
On 6/23/2010 12:20 AM, Dave Clements, GMOD Help Desk wrote:
<blockquote
cite="mid:AANLkTinjMfy8v_skYTwrfltJXQuOphBRF6CcU5LItkUB@mail.gmail.com"
type="cite">Hi Rohan,
<div><br>
</div>
<div>You should be able to control the display by including GBrowse
stanza definitions in your uploaded file.</div>
<div><br>
</div>
<div>See <a moz-do-not-send="true"
href="http://wormbase.org/gbrowse2/annotation_help.html#customize">http://wormbase.org/gbrowse2/annotation_help.html#customize</a>.
Try:</div>
<div>label = 0</div>
<div>description = 0</div>
<div><br>
</div>
<div>You can also strip optional attributes from column 9 before
loading the file.</div>
<div><br>
</div>
<div>Dave C.<br>
<br>
<div class="gmail_quote">On Tue, Jun 22, 2010 at 5:52 PM, Rohan
Bansal <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:bansal@princeton.edu">bansal@princeton.edu</a>></span>
wrote:<br>
<blockquote class="gmail_quote"
style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">To
The Help Desk,<br>
<br>
<br>
I am a user that creates simple gff3 files and uploads them to <a
moz-do-not-send="true" href="http://plasmodb.org" target="_blank">plasmodb.org</a>,
which hosts an instance of gbrowse online.<br>
<br>
While creating the gff3 file, I do not want the Name, Note, and ID
etc. as defined in column 9 (the attributes) to show on the track (i.e.
I would like to hide them). Is this at all possible to specify within
the gff3 file?<br>
<br>
<br>
Thank you,<br>
<br>
Rohan Bansal<br>
<br>
<a moz-do-not-send="true" href="mailto:bansal@princeton.edu"
target="_blank">bansal@princeton.edu</a><br>
</blockquote>
</div>
<br>
<br clear="all">
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