hi,<br> I did it as you said and I imported data to database sucessfully. Thank you very much!!!<br><div></div><br>Wangjun<br>ÔÚ2010-04-15 03:35:22£¬"Dave Clements, GMOD Help Desk" <help@gmod.org> дµÀ£º<br> <blockquote id="isReplyContent" style="border-left: 1px solid rgb(204, 204, 204); margin: 0px 0px 0px 0.8ex; padding-left: 1ex;"><div>You need to first define the reference feature, "408J" in GFF3. Something like:<br></div><div><br></div><div>408J Sequence whatever408JisInSO 1 howeverLong408JIs . . . Name=408J</div><div><br></div><div>This could be the first feature defined in your file, or it could be in a separate file.</div>
<div><br></div><div>Dave C.</div><div><br></div><div class="gmail_quote">2010/4/12 wangjun19820303 <span dir="ltr"><<a href="mailto:wangjun19820303@163.com">wangjun19820303@163.com</a>></span><br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
hi All,<br> I have a question about <a href="http://gmod_bulk_load_gff3.pl" target="_blank">gmod_bulk_load_gff3.pl</a>. When I used <a href="http://gmod_bulk_load_gff3.pl" target="_blank">gmod_bulk_load_gff3.pl</a> load data into chado database.There are errors.So I can't import data into database.I don't know why.<br>
<b>command:</b>(algae has already existed.)<br> <a href="http://gmod_bulk_load_gff3.pl" target="_blank">gmod_bulk_load_gff3.pl</a> --organism 'algae' --gfffile taihuanother.gbk.gff<br><b>error:</b><br> (Re)creating the uniquename cache in the database... <br>
Creating table...<br>Populating table...<br>Creating indexes...Done.<br>Preparing data for inserting into the chado database<br>(This may take a while ...)<br>Unable to find srcfeature 408J in the database.<br>Perhaps you need to rerun your data load with the '--recreate_cache' option. at /usr/local/share/perl/5.10.1/Bio/GMOD/DB/Adapter.pm line 4026<br>
Bio::GMOD::DB::Adapter::src_second_chance('Bio::GMOD::DB::Adapter=HASH(0x34cc5a8)', 'Bio::SeqFeature::Annotated=HASH(0x38cc280)') called at /usr/local/bin/<a href="http://gmod_bulk_load_gff3.pl" target="_blank">gmod_bulk_load_gff3.pl</a> line 758<br>
Issuing rollback() due to DESTROY without explicit disconnect() of DBD::Pg::db handle dbname=chado;port=5432;host=localhost at /usr/share/perl/5.10/Carp.pm line 45.<br><br>when I used '--recreate_cache' option,I got the same error.<br>
<br>I'm looking forward to your reply. Thank you !!!<br><br><br><br><br>------------------------------------------------------------------------------<br>
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