<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">The Wormbase gff validator has been down for a long time. The pathogen portal one is not very good. The one that should be at Wormbase should be available somewhere in the (formerly cvs) svn repository. <div><br></div><div>I should try to put a copy up on one of our public servers.<br><div><br></div><div>Jim</div><div><br><div><div>On Sep 14, 2009, at 11:41 PM, Dave Clements, GMOD Help Desk wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Hi Wes,<br><br>Thanks for the heads up on the GFF3 validator at WormBase. I don't<br>know what happened to it, but I'll investigate, and drop the link.<br><br>For the validator from pathogenportal, try dropping everything between<br>line 2 and the line that says =cut.<br><br>Thanks,<br><br>Dave C<br><br>On Mon, Sep 14, 2009 at 8:47 PM, Wes Barris <<a href="mailto:wes.barris@csiro.au">wes.barris@csiro.au</a>> wrote:<br><blockquote type="cite">Hi,<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">The GFF3 validation link to wormbase on this page:<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><a href="http://gmod.org/wiki/GFF3#GFF3_Validation">http://gmod.org/wiki/GFF3#GFF3_Validation</a><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">results in an error. I don't know whether or not wormbase is still<br></blockquote><blockquote type="cite">providing a gff3 validator.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Also, the gff3 validation perl code from the same page:<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><a href="http://www.pathogenportal.org/resources/gff3Valid.pl">http://www.pathogenportal.org/resources/gff3Valid.pl</a><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">has errors in it:<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">perl -c gff3Valid.pl<br></blockquote><blockquote type="cite">Number found where operator expected at gff3Valid.pl line 8, near "GFF3 1.01"<br></blockquote><blockquote type="cite"> (Do you need to predeclare GFF3?)<br></blockquote><blockquote type="cite">Bareword found where operator expected at gff3Valid.pl line 8, near "1.01 spec"<br></blockquote><blockquote type="cite"> (Missing operator before spec?)<br></blockquote><blockquote type="cite">Bareword found where operator expected at gff3Valid.pl line 10, near "//www"<br></blockquote><blockquote type="cite"> (Missing operator before www?)<br></blockquote><blockquote type="cite">Number found where operator expected at gff3Valid.pl line 22, near "over 4"<br></blockquote><blockquote type="cite"> (Do you need to predeclare over?)<br></blockquote><blockquote type="cite">syntax error at gff3Valid.pl line 8, near "GFF3 1.01"<br></blockquote><blockquote type="cite">Unmatched right curly bracket at gff3Valid.pl line 190, at end of line<br></blockquote><blockquote type="cite">syntax error at gff3Valid.pl line 190, near "}"<br></blockquote><blockquote type="cite">gff3Valid.pl had compilation errors.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">--<br></blockquote><blockquote type="cite">Wes Barris <<a href="mailto:wes.barris@csiro.au">wes.barris@csiro.au</a>><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">------------------------------------------------------------------------------<br></blockquote><blockquote type="cite">Come build with us! 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