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<p class=MsoNormal>Hi,<o:p></o:p></p>
<p class=MsoNormal><o:p> </o:p></p>
<p class=MsoNormal>I have just installed GBrowse1.9971 and it seems that the
density plots will not be rescaled according (attached: densitytrack.png). I
tried using the same conf settings on another server with the old gbrowse and
it turns out well (attached: old_density.png). And according to Bio::Graphics::Glyph::xyplot,
<o:p></o:p></p>
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New"'>-max_score
Maximum value of the feature's "score" attribute
[Default: Calculated]<o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New"'>
<o:p></o:p></span></p>
<p class=MsoNormal><o:p> </o:p></p>
<p class=MsoNormal>Conf file:<o:p></o:p></p>
<p class=MsoNormal>aggregators = profilePosDensity{intensity:FME715_density_positive}<o:p></o:p></p>
<p class=MsoNormal> [PosDensity]<o:p></o:p></p>
<p class=MsoNormal>feature =
profilePosDensity<o:p></o:p></p>
<p class=MsoNormal>glyph
= xyplot<o:p></o:p></p>
<p class=MsoNormal>graph_type = boxes<o:p></o:p></p>
<p class=MsoNormal>height = 50<o:p></o:p></p>
<p class=MsoNormal>min_score = 0<o:p></o:p></p>
<p class=MsoNormal>scale =
both<o:p></o:p></p>
<p class=MsoNormal>fgcolor = red<o:p></o:p></p>
<p class=MsoNormal>bgcolor = red<o:p></o:p></p>
<p class=MsoNormal>label
= 0<o:p></o:p></p>
<p class=MsoNormal>category = FME715<o:p></o:p></p>
<p class=MsoNormal>citation = <o:p></o:p></p>
<p class=MsoNormal>key
= FME715 Positive Density<o:p></o:p></p>
<p class=MsoNormal><o:p> </o:p></p>
<p class=MsoNormal>gff file:<o:p></o:p></p>
<p class=MsoNormal>chr1 FME715_density_positive
intensity
1 3003353
0 .
. Density FME715_density_positive<o:p></o:p></p>
<p class=MsoNormal>chr1 FME715_density_positive
intensity 3003354 3003403
1 .
. Density FME715_density_positive<o:p></o:p></p>
<p class=MsoNormal>chr1 FME715_density_positive
intensity 3003404 3015750
0 .
. Density FME715_density_positive<o:p></o:p></p>
<p class=MsoNormal>chr1 FME715_density_positive
intensity 3015751 3015780
1 .
. Density FME715_density_positive<o:p></o:p></p>
<p class=MsoNormal>chr1 FME715_density_positive
intensity 3015781 3027621
0 .
. Density FME715_density_positive<o:p></o:p></p>
<p class=MsoNormal>chr1 FME715_density_positive
intensity 3027622 3027655
1 .
. Density FME715_density_positive<o:p></o:p></p>
<p class=MsoNormal>chr1 FME715_density_positive
intensity 3027656 3077266
0 .
. Density FME715_density_positive<o:p></o:p></p>
<p class=MsoNormal>chr1 FME715_density_positive intensity
3077267 3077316 1
. .
Density FME715_density_positive<o:p></o:p></p>
<p class=MsoNormal>chr1 FME715_density_positive
intensity 3077317 3116697
0 .
. Density FME715_density_positive<o:p></o:p></p>
<p class=MsoNormal>chr1 FME715_density_positive
intensity 3116698 3116729
2 .
. Density FME715_density_positive<o:p></o:p></p>
<p class=MsoNormal><o:p> </o:p></p>
<p class=MsoNormal>Thank you. Your help is very much appreciated.<o:p></o:p></p>
<p class=MsoNormal><o:p> </o:p></p>
<p class=MsoNormal><o:p> </o:p></p>
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'>Best
Regards,</span><span style='font-size:12.0pt;font-family:"Times New Roman","serif"'><o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Arial","sans-serif"'>Wan
Ting</span><span style='font-size:12.0pt;font-family:"Times New Roman","serif"'><o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:12.0pt;font-family:"Times New Roman","serif"'> <o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:7.5pt;font-family:"Arial","sans-serif";
color:maroon'>---------------------------------</span><span style='font-size:
12.0pt;font-family:"Times New Roman","serif"'><o:p></o:p></span></p>
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<p class=MsoNormal><span style='font-size:7.5pt;font-family:"Arial","sans-serif";
color:maroon'>---------------------------------</span><o:p></o:p></p>
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