I think the tables are basically just tab delimited text files.<br><br>Here is an example:<br>#ID_REF = <br>#VALUE = number of times sequenced<br>ID_REF VALUE<br>AAAAAAAAAAAAAAAAAAGCTCAAAAAAAAAACAAC 2<br>AAAAAAAAAAAAAAAAAAGGCTAAAAAAAAAAAAAA 1<br>
AAAAAAAAAAAAAAAAAATCTGAAAAAAAAAAAAAA 10<br>AAAAAAAAAAAAAAAAAATGGGCCCCAAGAAAAAAA 1<br>AAAAAAAAAAAAAAAAACACCGAAAAAAAAACAAAA 1<br>AAAAAAAAAAAAAAAAACACTCGAAAAAAAAAAAAA 1<br>AAAAAAAAAAAAAAAAACGATGATGTAAAAAAAAAA 1<br>
AAAAAAAAAAAAAAAAAGCTCAAAAAAAAAAAAAAA 4<br>AAAAAAAAAAAAAAAAATGAGGAAATAAAAAAGAAA 5<br>AAAAAAAAAAAAAAAAATTGACAAAAAAAAAAAAAA 4<br>AAAAAAAAAAAAAAAACACCACAAAAAACCAAAACA 2<br>AAAAAAAAAAAAAAAACACCCAAAACAAAAAAAACA 4<br>
AAAAAAAAAAAAAAAACAGATTTTTACAAAAAAAAA 1<br>AAAAAAAAAAAAAAAACCCAACCCCCACCATAAAAA 1<br>AAAAAAAAAAAAAAAACCCACAACAAAAAAAAAAAA 2<br>AAAAAAAAAAAAAAAACCCACGCCAAAAAAAAAAAA 1<br>AAAAAAAAAAAAAAAACCGTATCCCGTAAAAAAAAA 1<br>
AAAAAAAAAAAAAAAAGAACTTAACCAAAAAAAAAA 1<br>AAAAAAAAAAAAAAAAGCCCAAAAAAAAAAAAAAAA 3<br>AAAAAAAAAAAAAAAAGGAAGGCCCAAAAAAAAAAA 2<br>AAAAAAAAAAAAAAAAGTCTGAAAAGAAAAAAAAAA 2<br>AAAAAAAAAAAAAAAATCAATCAATTTAAAAAAAAA 9<br>
AAAAAAAAAAAAAAAATCCAACGAAAAAAAAAAAAA 2<br>AAAAAAAAAAAAAAAATGAGCAAAAAAAAAAAAAAA 4<br>AAAAAAAAAAAAAAAATGCCGAAAAAAAAAAAAAAA 25<br><br>Thanks,<br>Kris<br><br><br><div class="gmail_quote">On Wed, Jul 29, 2009 at 5:36 PM, Dave Clements, GMOD Help Desk <span dir="ltr"><<a href="mailto:gmodhelp@googlemail.com">gmodhelp@googlemail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Hi Kris,<br>
<br>
I apologize for the very slow response. It has been (and will<br>
continue to be) a very busy 2 months for GMOD.<br>
<br>
What does your .txt file look like? Can you include and example here?<br>
You may have to write your own script to translate it into GFF3<br>
(<a href="http://gmod.org/wiki/GFF3" target="_blank">http://gmod.org/wiki/GFF3</a>), or if it's in a widely used format, you<br>
may be able to use an existing script.<br>
<br>
Thanks,<br>
<br>
Dave C.<br>
<div><div></div><div class="h5"><br>
On Mon, Jul 20, 2009 at 9:40 AM, Kris T<<a href="mailto:ktruncali@gmail.com">ktruncali@gmail.com</a>> wrote:<br>
> Hi everyone,<br>
><br>
> I got Gbrowse installed and running. Thanks for all your help.<br>
><br>
> Now, I want to configure Gbrowse to work with our database. However, the<br>
> database files are in txt format (not .gb format). I don't see a way to get<br>
> them in .gb format. Is there some way I can still configure Gbrowse to work<br>
> with our tables?<br>
><br>
> If I pasted the text in the .txt file over the contents of a .gb file, would<br>
> that be a usuable data source for Gbrowse?<br>
><br>
> Thanks,<br>
> Kris<br>
><br>
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