This is unpleasant news; I thought the session locking was pretty well tested. Can you describe how to reproduce this bug?<br><br>Lincoln<br><br><div class="gmail_quote">On Tue, Jul 28, 2009 at 12:26 PM, joseph franklin <span dir="ltr"><<a href="mailto:joseph.franklin@yale.edu">joseph.franklin@yale.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">(Now that I've recovered the browser installation, I'll post my original question)<br>
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When I use either ModPerl or Fast-CGI in Gbrowse2 (1.996), track loading and refresh are both nicely accelerated. However, in either of these modes, it seems like the session locks get overwritten, rather than created, when a new user accesses the browser (the landmarks, tracks, etc. are lost for the first user). The default installation (localhost/cgi-bin/gb2/) appears to be locking sessions normally.<br>
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Realizing that GBrowse 2 is pre-release, I'd love to hear if anyone has any easy suggestions (or perhaps this is a bug).<br>
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I'm running this on Ubuntu 9.04 (webserver: Apache/2.2.11 (Ubuntu) PHP/5.2.6-3ubuntu4.1 with Suhosin-Patch mod_perl/2.0.4 Perl/v5.10.0 Server).<br>
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Here is my GBrowse.conf session settings stanza:<br>
# session settings<br>
session driver = driver:file;serializer:default<br>
session args = Directory /var/tmp/gbrowse2/sessions<br>
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/var/tmp/gbrowse2/sessions and /var/tmp/gbrowse2/locks are both writable to the server, and indeed written to when any new session is started (except in the mod_perl or fcgi cases, when relevant session/lock files are overwritten).<br>
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Thanks,<br>
joe<br>
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________________________________<br>
Joe Franklin<br>
Department of Cell Biology<br>
Yale University School of Medicine<br>
295 Congress Ave, BCMM 137<br>
New Haven, CT 06519<br>
USA<br><font color="#888888">
<br>
<a href="mailto:joseph.franklin@yale.edu" target="_blank">joseph.franklin@yale.edu</a><br>
407 341 3263 (cell)<br>
203 654 7494 (google voice)<br>
<br>
</font></blockquote></div><br><br clear="all"><br>-- <br>Lincoln D. Stein<br>Director, Informatics and Biocomputing Platform<br>Ontario Institute for Cancer Research<br>101 College St., Suite 800<br>Toronto, ON, Canada M5G0A3<br>
416 673-8514<br>Assistant: Renata Musa <<a href="mailto:Renata.Musa@oicr.on.ca">Renata.Musa@oicr.on.ca</a>><br>