hello Dave!<br><br><br>the steps related in chado install were executed.<br>this erro appears when I execute the commans listed in this How to<br><br><a href="http://gmod.org/wiki/Load_GFF_Into_Chado">http://gmod.org/wiki/Load_GFF_Into_Chado</a><br>
<br><br><div style="text-align: left;" id="result_box" dir="ltr">forgive my poor english!<br><br><br>thank you!<br><br><br>Fernando<br></div><br><br><div class="gmail_quote">2009/6/30 Dave Clements, GMOD Help Desk <span dir="ltr"><<a href="mailto:gmodhelp@googlemail.com">gmodhelp@googlemail.com</a>></span><br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Hi Fernando,<br>
<br>
Chromosome is a defined term in the sequence ontology. I believe this<br>
error means that either the "make ontologies" step was not run, or<br>
their was a problem with it. Was this step run? Were the<br>
relationship and sequence ontologies loaded?<br>
<br>
See<br>
<a href="http://gmod.cvs.sourceforge.net/*checkout*/gmod/schema/chado/INSTALL.Chado" target="_blank">http://gmod.cvs.sourceforge.net/*checkout*/gmod/schema/chado/INSTALL.Chado</a><br>
for more on the make ontologies step.<br>
<br>
Cheers,<br>
<br>
Dave C.<br>
<div><div></div><div class="h5"><br>
On Mon, Jun 29, 2009 at 10:33 AM, fernando bueno<<a href="mailto:stradlinbueno@gmail.com">stradlinbueno@gmail.com</a>> wrote:<br>
> Hi!<br>
><br>
> I'm from Brazil. I'm with a problem to insert data in my CHADO schema.<br>
> When the command :<br>
> gmod_bulk_load_gff3.pl --organism yeast saccharomyces_cerevisiae.gff<br>
> is executed, this error appears:<br>
><br>
> ------------- EXCEPTION: Bio::Root::Exception -------------<br>
> MSG: no cvterm for chromosome<br>
> STACK: Error::throw<br>
> STACK: Bio::Root::Root::throw<br>
> /usr/local/share/perl/5.10.0/Bio/Root/Root.pm:357<br>
> STACK: Bio::GMOD::DB::Adapter::get_type<br>
> /usr/local/share/perl/5.10.0/Bio/GMOD/DB/Adapter.pm:4224<br>
> STACK: /usr/local/bin/gmod_bulk_load_gff3.pl:783<br>
> -----------------------------------------------------------<br>
> Issuing rollback() due to DESTROY without explicit disconnect() of<br>
> DBD::Pg::db handle dbname=chado;port=5432;host=localhost at<br>
> /usr/local/share/perl/5.10.0/Error.pm line 184.<br>
><br>
><br>
> could your help me?<br>
><br>
><br>
> thanks!!!<br>
><br>
><br>
> Fernando<br>
><br>
><br>
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