Hi SoonJoo,<br><br>I had hoped to get to this today, but that is not going to happen. I am also out of the office until next Tuesday so I am forwarding your question on to the Schema list.<br><br>Dave C.<br><br><div class="gmail_quote">
On Wed, Jun 17, 2009 at 9:14 PM, Yap, Soon <span dir="ltr"><<a href="mailto:syap@jcvi.org">syap@jcvi.org</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
<div>
<p><font size="2">Hi,<br>
<br>
I've try to load the sample GFF file to my database (running gmod_bulk_load_gff3.pl --organism yeast --gfffile /home/soonjoo/Desktop/saccharomyces_cerevisiae.sorted.gff ). But I'm facing a problem with the following error message.<br>
<br>
DBD::Pg::st execute failed: ERROR: more than one row returned by a subquery used as an expression [for Statement "SELECT indkey FROM pg_catalog.pg_index<br>
WHERE indisprimary=true AND indrelid=(<br>
SELECT oid FROM pg_catalog.pg_class<br>
WHERE relname = ?)<br>
" with ParamValues: 1='genotype'] at /usr/local/lib/perl5/site_perl/5.10.0/DBIx/ContextualFetch.pm line 52.<br>
Compilation failed in require at /usr/local/lib/perl5/site_perl/5.10.0/Bio/GMOD/Load.pm line 3.<br>
BEGIN failed--compilation aborted at /usr/local/lib/perl5/site_perl/5.10.0/Bio/GMOD/Load.pm line 3.<br>
<br>
I can't figure out what is the problem with the script. Any help would be really appreciated.<br>
<br>
Thanks and regards<br>
<br>
SoonJoo,Yap</font>
</p>
</div>
</blockquote></div><br><br clear="all"><br>-- <br>Learn more about GMOD at:<br> Galaxy Workshop at NBIC: <a href="http://www.nbic.nl/nbic/newsevents/Galaxy/">http://www.nbic.nl/nbic/newsevents/Galaxy/</a><br> ISMB/ECCB: <a href="http://www.iscb.org/ismbeccb2009/">http://www.iscb.org/ismbeccb2009/</a><br>
(BioMart, Chado, Galaxy, InterMine) <br>