<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Mark - <div><br></div><div>Try upgrading your GD::SVG to the most current version on CPAN.</div><div><br></div><div>Todd</div><div><br></div><div><br><div><div>On May 29, 2009, at 9:42 AM, mark meyer wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">We use the GD::SVG and was never able to get the inkscape (pdf generation) operational, if that helps any.<br><br> <div class="gmail_quote">On Fri, May 29, 2009 at 9:52 AM, Scott Cain <span dir="ltr"><<a href="mailto:scott@scottcain.net">scott@scottcain.net</a>></span> wrote:<br> <blockquote style="BORDER-LEFT: #ccc 1px solid; MARGIN: 0px 0px 0px 0.8ex; PADDING-LEFT: 1ex" class="gmail_quote">Hi all,<br><br>Could this be a bad interaction between the plug in and GD::SVG or<br>inkscape (depending on what sort of hi res image you are getting)?<br> For example, I think that GD::SVG has a hard time with alpha channels.<br><br>Scott<br> <div> <div></div> <div class="h5"><br><br>On Fri, May 29, 2009 at 10:31 AM, mark meyer <<a href="mailto:mmeyerposting@gmail.com">mmeyerposting@gmail.com</a>> wrote:<br>> Hi Angie,<br>><br>> Bill is out of the office today, but I can try to answer your questions.<br> > Attached are the two screen shots, one is what the plugin looks like in the<br>> gbrowse, just fine as it looks in UCSC. The second is what happens when you<br>> click on high-res image.<br>><br>> We are running gbrowse v1.69. The plugin code was implemented and<br> > downloaded about 1 month ago, just recently ran into this issue since we are<br>> trying to make some publication figures from our Gbrowse data.<br>><br>> I can access conf files, etc. if you need to see them and try to do my best<br> > to answer questions, but I may not be able to answer very detailed questions<br>> in Bill's absence since he has been the one configuring this.<br>><br>> Thanks for checking into this for us,<br>><br> > Mark<br>><br>> On Thu, May 28, 2009 at 5:29 PM, Angie Hinrichs <<a href="mailto:angie@soe.ucsc.edu">angie@soe.ucsc.edu</a>> wrote:<br>>><br>>> Dave - yes, that sounds likely.<br>>><br>>> Bill, what version of GBrowse are you running? How recently did you<br> >> grab the plugin code? I didn't get the screenshot attachment so if<br>>> you wouldn't mind sending that to me, that would be helpful. If your<br>>> GBrowse is on a public server, can you send the URL?<br> >><br>>> Angie<br>>><br>>> On Thu, 28 May 2009, Dave Clements, GMOD Help Desk wrote:<br>>><br>>> > Hi Bill,<br>>> ><br>>> > I have no particular insight on why this is happening. My guess is<br> >> > that it is due some obscure interaction between the UCSC plugin and<br>>> > core GBrowse, but I don't actually know.<br>>> ><br>>> > I've CC'd Angie at UCSC to see if she may have any insight.<br> >> ><br>>> > Dave C.<br>>> ><br>>> ><br>>> ><br>>> > On Tue, May 26, 2009 at 2:25 PM, Bill Pulec <<a href="mailto:wpulec@gmail.com">wpulec@gmail.com</a>> wrote:<br> >> > > Hi All,<br>>> > > I am attempting to view high-res images of conservation tracks but the<br>>> > > background of these tracks in high-res is blue. This isn't the case<br>>> > > when<br> >> > > these tracks are displayed in gbrowse normally, it only happens when<br>>> > > viewed<br>>> > > as high-res. Also all the non-conservation tracks are fine in high<br>>> > > res. Is<br> >> > > there any reason why outputting these images in high-res would do<br>>> > > this? Has<br>>> > > anyone encountered other tracks doing this in high-res? Any insight<br>>> > > would be<br> >> > > appreciated. I have attached an example image of the track below.<br>>> > ><br>>> > > Thanks,<br>>> > > Bill<br>>> > ><br>>> > ><br>>> > ><br> >> ><br>>> > Was this helpful? Let us know at<br>>> > <a href="http://gmod.org/wiki/Help_Desk_Feedback" target="_blank">http://gmod.org/wiki/Help_Desk_Feedback</a><br>>> ><br>>> > Learn more about GMOD at:<br> >> > SMBE:<br>>> > <a href="http://ccg.biology.uiowa.edu/smbe/symposia.php?action=view&sym_ID=27" target="_blank">http://ccg.biology.uiowa.edu/smbe/symposia.php?action=view&sym_ID=27</a><br>>> > Arthropod Genomics: <a href="http://www.k-state.edu/agc/symp2009/seminar.html" target="_blank">http://www.k-state.edu/agc/symp2009/seminar.html</a><br> >> > AGA Next Gen Seq in Non-Models:<br>>> > <a href="http://www.regonline.com/Nextgeneration" target="_blank">http://www.regonline.com/Nextgeneration</a><br>>> ><br>>><br>>><br>>> ------------------------------------------------------------------------------<br> >> Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT<br>>> is a gathering of tech-side developers & brand creativity professionals.<br>>> Meet<br>>> the minds behind Google Creative Lab, Visual Complexity, Processing, &<br> >> iPhoneDevCamp as they present alongside digital heavyweights like<br>>> Barbarian<br>>> Group, R/GA, & Big Spaceship. <a href="http://p.sf.net/sfu/creativitycat-com" target="_blank">http://p.sf.net/sfu/creativitycat-com</a><br> >> _______________________________________________<br>>> Gmod-gbrowse mailing list<br>>> <a href="mailto:Gmod-gbrowse@lists.sourceforge.net">Gmod-gbrowse@lists.sourceforge.net</a><br>>> <a href="https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse" target="_blank">https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse</a><br> ><br>><br><br><br><br></div></div><font color="#888888">--<br>------------------------------------------------------------------------<br>Scott Cain, Ph. D. scott at scottcain dot net<br> GMOD Coordinator (<a href="http://gmod.org/" target="_blank">http://gmod.org/</a>) 216-392-3087<br>Ontario Institute for Cancer Research<br></font></blockquote></div><br> ------------------------------------------------------------------------------<br>Register Now for Creativity and Technology (CaT), June 3rd, NYC. CaT <br>is a gathering of tech-side developers & brand creativity professionals. Meet<br>the minds behind Google Creative Lab, Visual Complexity, Processing, & <br>iPhoneDevCamp as they present alongside digital heavyweights like Barbarian <br>Group, R/GA, & Big Spaceship. <a href="http://p.sf.net/sfu/creativitycat-com">http://p.sf.net/sfu/creativitycat-com</a> _______________________________________________<br>Gmod-gbrowse mailing list<br><a href="mailto:Gmod-gbrowse@lists.sourceforge.net">Gmod-gbrowse@lists.sourceforge.net</a><br>https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse<br></blockquote></div><br></div></body></html>