<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Neil,<div><br></div><div>Try setting the environmental variable PERL5LIB:</div><div><br></div><div><span class="Apple-style-span" style="font-family: Times; font-size: 16px; "><dt><strong><a name="item_PERL5LIB">PERL5LIB</a></strong><div><br class="webkit-block-placeholder"></div></dt><dd><font size="-1">A</font> colon-separated list of directories in which to look for Perl library files before looking in the standard library and the current directory. If <font size="-1">PERL5LIB</font> is not defined, <font size="-1">PERLLIB</font> is used. When running taint checks (because the script was running setuid or setgid, or the <strong>-T</strong> switch was used), neither variable is used. The script should instead say<div><br class="webkit-block-placeholder"></div><pre> use lib "/my/directory";
</pre><div><br></div></dd></span><div><div>Brian O.</div><div><br></div><div><br></div><div>On May 12, 2009, at 1:36 PM, Dave Clements, GMOD Help Desk wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Hi Neil,<br><br>I'm cross-posting your question to the BioPerl list as 1) it is more<br>of a perl question than a GBrowse question, and 2) I don't know the<br>answer.<br><br>Dave C.<br>GMOD Help Desk<br><br>Was this helpful? Let us know at <a href="http://gmod.org/wiki/Help_Desk_Feedback">http://gmod.org/wiki/Help_Desk_Feedback</a><br><br>Learn more about GMOD at SMBE & Arthropod Genomics:<br> <a href="http://ccg.biology.uiowa.edu/smbe/symposia.php?action=view&sym_ID=27">http://ccg.biology.uiowa.edu/smbe/symposia.php?action=view&sym_ID=27</a><br> <a href="http://www.k-state.edu/agc/symp2009/seminar.html">http://www.k-state.edu/agc/symp2009/seminar.html</a><br><br><br><br>On Thu, May 7, 2009 at 7:26 PM, Neil Saunders <<a href="mailto:neilfws@gmail.com">neilfws@gmail.com</a>> wrote:<br><blockquote type="cite">I'm trying to install the latest Gbrowse (1.99) on a machine where I do<br></blockquote><blockquote type="cite">not have root access (Ubuntu/dapper).<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">I have set up non-root CPAN and installed all of the prerequisites, no<br></blockquote><blockquote type="cite">problems, in ~/lib/perl5. However, when I try to install Gbrowse either<br></blockquote><blockquote type="cite">via CPAN or using the latest CVS Build script, I run into this problem:<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Global symbol "$VAR1" requires explicit package name at (eval 28) line<br></blockquote><blockquote type="cite">1088, <GEN6> line 1.<br></blockquote><blockquote type="cite"> ...propagated at /usr/local/share/perl/5.8.7/Module/Build/Base.pm line<br></blockquote><blockquote type="cite">1002, <GEN6> line 1.<br></blockquote><blockquote type="cite">make: *** [all] Error 255<br></blockquote><blockquote type="cite"> LDS/GBrowse-1.99.tar.gz<br></blockquote><blockquote type="cite"> /usr/bin/make -- NOT OK<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">It seems that there are 2 versions of Module::Builder on the machine. I<br></blockquote><blockquote type="cite">have installed a version from CPAN which is found in<br></blockquote><blockquote type="cite">~/lib/perl5/site_perl/Module/. However, from the above error it looks<br></blockquote><blockquote type="cite">as though the install is trying to use a system-wide version of<br></blockquote><blockquote type="cite">Module::Build in /usr/local/share/perl/5.8.7.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Can anyone shed any light on either the error message, or a way to force<br></blockquote><blockquote type="cite">usage of my $HOME module, not the system one?<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">thanks,<br></blockquote><blockquote type="cite">Neil Saunders<br></blockquote><blockquote type="cite">--<br></blockquote><blockquote type="cite"> Statistical Bioinformatics - Health<br></blockquote><blockquote type="cite"> CSIRO Mathematical and Information Sciences<br></blockquote><blockquote type="cite"> Locked Bag 17, North Ryde, NSW 1670, Australia<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><a href="http://friendfeed.com/neilfws">http://friendfeed.com/neilfws</a><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">------------------------------------------------------------------------------<br></blockquote><blockquote type="cite">The NEW KODAK i700 Series Scanners deliver under ANY circumstances! Your<br></blockquote><blockquote type="cite">production scanning environment may not be a perfect world - but thanks to<br></blockquote><blockquote type="cite">Kodak, there's a perfect scanner to get the job done! With the NEW KODAK i700<br></blockquote><blockquote type="cite">Series Scanner you'll get full speed at 300 dpi even with all image<br></blockquote><blockquote type="cite">processing features enabled. <a href="http://p.sf.net/sfu/kodak-com">http://p.sf.net/sfu/kodak-com</a><br></blockquote><blockquote type="cite">_______________________________________________<br></blockquote><blockquote type="cite">Gmod-gbrowse mailing list<br></blockquote><blockquote type="cite"><a href="mailto:Gmod-gbrowse@lists.sourceforge.net">Gmod-gbrowse@lists.sourceforge.net</a><br></blockquote><blockquote type="cite"><a href="https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse">https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse</a><br></blockquote><blockquote type="cite"><br></blockquote><br>_______________________________________________<br>Bioperl-l mailing list<br><a href="mailto:Bioperl-l@lists.open-bio.org">Bioperl-l@lists.open-bio.org</a><br><a href="http://lists.open-bio.org/mailman/listinfo/bioperl-l">http://lists.open-bio.org/mailman/listinfo/bioperl-l</a><br></div></blockquote></div><br></div></body></html>