I'm sorry you're having this problem. If I understand correctly, the problem occurred only after you loaded the X chromosome, and now affects all chromosomes except for YHet?<br><br>Could you try clearing out the database and loading chromosomes in the order 2L, 2R, 3L, 3R, 4, X and check whether the problem appears after each chromosome is loaded? I am hoping that this is an isolated problem in the chromosome X GFF3 file; this will help narrow it down.<br>
<br>Lincoln<br><br><div class="gmail_quote">2009/4/30 Miquel Rāmia <span dir="ltr"><miquel.ramia@uab.cat></span><br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
I downloaded the files from<br>
<a href="ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff/" target="_blank">ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff/</a><br>
(r5.16 was the current few weeks ago)<br>
<br>
Here are 2 screenshots, searching both by crhomosome name, the YHet<br>
looks good, and the X shows the "match" screen, any click in the results<br>
(only one in this case) always returns the "match" screen<br>
<br>
<br>
<br>
<br>
El dc 29 de 04 del 2009 a les 11:46 -0700, en/na Dave Clements, GMOD<br>
Help Desk va escriure:<br>
<div><div></div><div class="h5">> Hi Miquel,<br>
><br>
> Can you send screenshots of what it looks like when it working and<br>
> when it isn't?<br>
><br>
> Also are the GFF files from<br>
> <a href="ftp://ftp.flybase.net/releases/FB2009_04/dmel_r5.17/gff/" target="_blank">ftp://ftp.flybase.net/releases/FB2009_04/dmel_r5.17/gff/</a> ?<br>
><br>
> I don't have any explanation for this behavior, yet.<br>
><br>
> Thanks,<br>
><br>
> Dave C.<br>
><br>
> Was this helpful? Let us know at <a href="http://gmod.org/wiki/Help_Desk_Feedback" target="_blank">http://gmod.org/wiki/Help_Desk_Feedback</a><br>
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><br>
><br>
> 2009/4/27 Miquel Rāmia <miquel.ramia@uab.cat><br>
> ><br>
> > Hi,<br>
> ><br>
> > I'm running Gbrowse 1.69 in a Linux CentOS. I'm trying to upload the<br>
> > D.melanogaster GFF data from flybase to a mysql database. And I have a<br>
> > problem: In some chromosomes , via searching landmark/region by name, I<br>
> > can view de detailed view and tracks, or an overview with the "more than<br>
> > 1.3 Mb not displayed" message; I zoom in and no problem.<br>
> ><br>
> > But with other chromosomes I can only see a "match" r with no zoom<br>
> > option and without detailed view or anything.<br>
> ><br>
> > I tried loading de GFFs chromsome by chromosome (in this order : YHet,<br>
> > U, X, 4, 3R ...). At first I could view the YHet and U details and<br>
> > tracks with no problem, but after loading X data I couldn't view U<br>
> > details but the YHet only. The same with all the chromosomes loaded into<br>
> > the database.<br>
> ><br>
> > Any idea ?<br>
> ><br>
> > Thank you!<br>
> ><br>
> > Miquel Rāmia<br>
> ><br>
> ><br>
> ><br>
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</div></div></blockquote></div><br><br clear="all"><br>-- <br>Lincoln D. Stein<br>Director, Informatics and Biocomputing Platform<br>Ontario Institute for Cancer Research<br>101 College St., Suite 800<br>Toronto, ON, Canada M5G0A3<br>
416 673-8514<br>Assistant: Renata Musa <<a href="mailto:Renata.Musa@oicr.on.ca">Renata.Musa@oicr.on.ca</a>><br>