Hey Dave,<br> Thanks for reply. Actually what i was doing, i have different gff file for different chromosome and i was just combining them all and loading it.<br>But ya know the problem is solved. I loaded all the files (for different chromosomes) together on single command line.<br>
<br>Thanks<br>Shalabh<br><br><br><div class="gmail_quote">On Fri, Oct 31, 2008 at 5:15 PM, Dave Clements, GMOD Help Desk <span dir="ltr"><<a href="mailto:gmodhelp@googlemail.com">gmodhelp@googlemail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Shalabh,<br>
<br>
More than one chromosome per GFF file and MySQL database should be<br>
fine. Does each of the chomosomes have a full-length entry for it in<br>
the GFF file? For example:<br>
<br>
chrI SGD chromosome 1 230208 . . . ID=chrI;dbxref=NCBI:NC_001133<br>
chrI ...<br>
chrII SGD chromosome 1 813178 . . . ID=chrII;dbxref=NCBI:NC_001134<br>
chrII ...<br>
<br>
Dave C.<br>
<div><div></div><div class="Wj3C7c"><br>
<br>
On Fri, Oct 31, 2008 at 7:23 AM, shalabh sharma<br>
<<a href="mailto:shalabh.sharma7@gmail.com">shalabh.sharma7@gmail.com</a>> wrote:<br>
> Hi,<br>
> I am using gbrowse V1.7 om MacOX (Tiger).<br>
> I am building a database on mysql . I have one (.gff3) file for all the<br>
> chromosomes (chr1-chr21).<br>
> I have loaded that file in mysql database, it worked fine.<br>
> But the problem is that when i type any other chromosome other then chr1<br>
> (like chr7 or chr21) it says :<br>
><br>
> The landmark named chr7 is not recognized. See the help pages for<br>
> suggestions<br>
><br>
> but its working fine for chr1.<br>
> Is it that i have to make different mysql database for different<br>
> chromosomes?<br>
> I would really appreciate if anyone can help me out.<br>
><br>
> Thanks<br>
> Shalabh<br>
><br>
><br>
><br>
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