<div dir="ltr">Hi Timo,<br><br>I had a look at the GD::SVG rendering and realized that the xyplot glyph is trying to draw lots of fractional-width rectangles. This works in GD (rounds up to the nearest integer), but not in GD::SVG. Since this is not clearly a GD::SVG bug, I fixed the glyph so that it works properly with GD:SVG.<br>
<br>To get the fixed code you will have to SVN update to the latest bioperl-live.<br><br>Lincoln<br><br><div class="gmail_quote">On Wed, Jul 30, 2008 at 7:34 PM, Dave Clements, GMOD Help Desk <span dir="ltr"><<a href="mailto:gmodhelp@googlemail.com">gmodhelp@googlemail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Hi Timo,<br>
<br>
First, I apologize for taking a full month to get back to you.<br>
Several of us have been on the road for much of July and some things<br>
fell through the cracks.<br>
<br>
I talked with Lincoln and Scott about both the bug and the feature<br>
request. First, we think the bug is in GD::SVG, a library used by<br>
GBrowse. Please submit a bug report for GD::SVG. That will help us<br>
keep track of it. See<br>
<br>
<a href="http://rt.cpan.org/Public/Bug/Report.html?Queue=GD-SVG" target="_blank">http://rt.cpan.org/Public/Bug/Report.html?Queue=GD-SVG</a><br>
<br>
for how to do that, or just send an e-mail to <a href="mailto:bug-GD-SVG@rt.cpan.org">bug-GD-SVG@rt.cpan.org</a>.<br>
<br>
For the second item, plese file a feature request for GBrowse at<br>
<br>
<a href="http://sourceforge.net/tracker/?group_id=27707&atid=391294" target="_blank">http://sourceforge.net/tracker/?group_id=27707&atid=391294</a><br>
<br>
Thanks,<br>
<br>
Dave C.<br>
GMOD Help Desk<br>
<div><div></div><div class="Wj3C7c"><br>
On Tue, Jul 1, 2008 at 10:45 AM, Timo Sachsenberg<br>
<<a href="mailto:timo.sachsenberg@tuebingen.mpg.de">timo.sachsenberg@tuebingen.mpg.de</a>> wrote:<br>
> Hi,<br>
> I think I stumbled over a bug in the svg rendering module.<br>
> Check out:<br>
> <a href="http://gbrowse.weigelworld.org/cgi-bin/gbrowse/attax/" target="_blank">http://gbrowse.weigelworld.org/cgi-bin/gbrowse/attax/</a><br>
> If I select one raw intensity track and click on High-res image to get the svg the wiggle<br>
> track isn't drawn correctly (nearly all bars are missing).<br>
><br>
> And I'd like to re-request following feature:<br>
> max_score=16 gets ignored and rounded up to 20. This doesn't make sense for log scaled data and explicit definition of max_score in the config file should not be ignored.<br>
><br>
> Thanx.<br>
> Cheers,<br>
> Timo<br>
><br>
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</div></div></blockquote></div><br><br clear="all"><br>-- <br>Lincoln D. Stein<br><br>Ontario Institute for Cancer Research<br>101 College St., Suite 800<br>Toronto, ON, Canada M5G0A3<br>416 673-8514<br>Assistant: Stacey Quinn <<a href="mailto:Stacey.Quinn@oicr.on.ca">Stacey.Quinn@oicr.on.ca</a>><br>
<br>Cold Spring Harbor Laboratory<br>1 Bungtown Road<br>Cold Spring Harbor, NY 11724 USA<br>(516) 367-8380 <br>Assistant: Sandra Michelsen <<a href="mailto:michelse@cshl.edu">michelse@cshl.edu</a>><br>
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