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<P><FONT SIZE=2 FACE="Arial">I run into the following error when trying to load Chado:</FONT>
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<P><FONT SIZE=2 FACE="Courier New">gmod_bulk_load_gff3.pl --organism yeast --gfffile ~/tmp/saccharomyces_cerevisiae.gff.sorted --dbname chadotest<BR>
Preparing data for inserting into the chadotest database<BR>
(This may take a while ...)<BR>
Can't locate object method "database" via package "Bio::Annotation::SimpleValue" at /usr/lib/perl5/site_perl/5.8.8/Bio/GMOD/DB/Adapter.pm line 3061, <GEN0> line 1.<BR>
Issuing rollback() for database handle being DESTROY'd without explicit disconnect().</FONT>
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<P><FONT SIZE=2 FACE="Arial">I found reference to this problem online (</FONT><A HREF="http://www.nabble.com/question-about-gmod_bulk_load_gff3.pl-td15135949.html"><U><FONT COLOR="#0000FF" SIZE=2 FACE="Arial">http://www.nabble.com/question-about-gmod_bulk_load_gff3.pl-td15135949.html</FONT></U></A><FONT SIZE=2 FACE="Arial">) with the recommendation of downloading the 'live' version of BioPerl. However, upon browsing the latest code in SVN I do not see inclusion of a "database" method. Is this still the recommended solution to the problem?</FONT></P>
<P><FONT SIZE=2 FACE="Arial">Thanks,</FONT>
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<P><FONT SIZE=2 FACE="Arial">Todd</FONT>
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<P><B><SPAN LANG="en-gb"><FONT COLOR="#808080" SIZE=1 FACE="Arial">Todd Moughamer</FONT></SPAN></B>
<P ALIGN=JUSTIFY><SPAN LANG="en-gb"><FONT COLOR="#808080" SIZE=1 FACE="Arial">Bioinformatics Consultancy & Training Group</FONT></SPAN></P>
<P ALIGN=JUSTIFY><SPAN LANG="en-gb"><FONT COLOR="#808080" SIZE=1 FACE="Arial">Syngenta Biotechnology, Inc.</FONT></SPAN></P>
<P ALIGN=JUSTIFY><SPAN LANG="en-gb"><FONT COLOR="#808080" SIZE=1 FACE="Arial">3054 Cornwallis Road, 1243.E</FONT></SPAN></P>
<P ALIGN=JUSTIFY><SPAN LANG="en-gb"><FONT COLOR="#808080" SIZE=1 FACE="Arial">Research Triangle Park, NC 27709-2257</FONT></SPAN></P>
<P ALIGN=JUSTIFY><SPAN LANG="en-gb"><FONT COLOR="#808080" SIZE=1 FACE="Arial">Tel: 919-597-3078</FONT></SPAN></P>
<P><SPAN LANG="en-gb"><FONT COLOR="#808080" SIZE=1 FACE="Arial">Email: todd.moughamer@syngenta.com</FONT></SPAN>
<BR><SPAN LANG="en-gb"><U></U></SPAN><A HREF="file://www.syngenta.com"><SPAN LANG="en-gb"><U><FONT COLOR="#0000FF" SIZE=1 FACE="Arial">www.syngenta.com</FONT></U><U></U></SPAN></A><SPAN LANG="en-gb"><U></U></SPAN><SPAN LANG="en-us"></SPAN>
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