[Gmod-help] Genome annotation tools

[Ty Wang]

Dear Sir:

 

How are you? I am a bioinformatician working at Duke Sequencing Core
facility. I work on a lichen genome annotation project. Lichen has two
genomes, mycobiont and photobiont. We are looking for tools software for
automated genome annotation in non-model systems. So far, we are interested
in two software packages specifically (but open to any suggestion). One of
them is called MAKER recommended by GMOD. The other one is JGI annotation
pipeline http://www.jsbi.org/journal/GIW06/GIW06P136.pdf. MARKER is good at
gene structural annotation. And JGI annotation pipeline provides additional
functional annotation. I could be wrong. What do you think? This is my first
time working on a genome annotation projection. I would really appreciate if
you can give me any suggestion or direct me to the right person. Looking
forward to your reply. Thanks!

 

Ty

 

 

 

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